BAC Information

Click to search

BAC

Clone NameMSMg01-059F12
Chromosome17 (Build37)
Map Location 85,446,582 - 85,447,026
singlet/doubletsinglet
Overlap geneSlc3a1
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b
Downstream genePrepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059F12.T7 (MSMg01no059_f12.b1)MSMg01-059F12.TJ (MSMg01no059_f12.g1)
ACCAG286044AG286045
length700696
length of high quality
(start - end)
456 (47 - 502)449 (70 - 518)
definitionCHROMAT_FILE: MSMg01no059_f12.b1 PHD_FILE: MSMg01no059_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:49 2005CHROMAT_FILE: MSMg01no059_f12.g1 PHD_FILE: MSMg01no059_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCATTTTACTTATCTGACTTATTTGGCTTCATTAAGAGCATCATGCA
ATTTTAGATTTTCTTCAGGCATACAATGTACTGCTAAGATTCACGGGGAC
GGCCACACACTGCTGTAACTTGGTCAATGTAACATATCCCGTGACACACA
ACACAACTCCAACATTTTGGAGTATGTGTGGGGACTACTGTCTACCTAAC
CAGAGGAACTACGGTAACTACAGAAGAGTGATCAACCAGAGGAATCCGGT
AGGTAGCCTGTGAGAATCACTATTGTAGTGCCTCAAGGAATGTAGCTTAG
ACAACGAGTAGGCTTGGTTTGGAGCTCCGTAACCCTGAGTCCTGAGGCTC
ACCTAATGGAAATGGCGACGCCTCTTTTGCCTGTTTATTGAAAGACTCAG
TGCTAATTCCCTTCTGTTCAGACTGGTCTTGATCACCTAGGTAAGTCCCG
GGAAACTGGGACTCAGTGAGCAAACTCTGTCACTCCATTGTGTCCCCAAT
ACCCTCACTGAAAAAAGATTTGCCATCGATCCCTGTCTCTGTAAAGAATC
AGGGAAGGGTCCTCCAGATGCACACATTATAAGGGAAACACTTCCCGAGG
ACCTCCCTGCAGTGGAACAAGCCTATCCTTGTAACTGGTATCCTAAACAA

CCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTATTCTGAAACACCCATTGGGCACCAAG
AAAAATTGATGCATTGAGGTACATCCTCTCTTCCTGACCTGCCAGGGACA
TTTGTCACATCTGAGGACAGTTTTAGTTGTCATAACTAGAAGTCAAGGTG
GAGGCAAGCCCTTCTGGCACCTGTCGTGGGCTGCTGATCATCTGGCAACA
CACAACCCACCTTCCCAAGTTAAGCTAGGAGTAGGTAGCAGCACACACCT
GGCACACCCACTCTCAGGAGAGCGAGGCAAGGGGATTGCTTTGAGATCAA
GGCTAGCCTGAGCTACACAGGATGACTCTGTCTCATAAAACAAAACAATC
AACAACAACAACAAAATCCCACAACAAAGAATTATCTGACCTAAATGTTG
CTAGTGTCAGGGCCAAGAATCCATGTTCTATTAATCGCTTTTCCTACGGC
TGTTATAAAACGGTCTGACCAAGGCAGCCTGTAGCATGAAGGGTTCGTCT
GGGGCTTGTGTTTGCAGAGGTGTAAAAGTCCATCCTCCCGTCCAAGGTGA
AAGCATGACAGCATGCACGCCTGGCGACTGGAGCATCTGAAAATTCCAAT
CTCAAATCCCTAGCAGAAAGTCCATGGTTCCGAGCTTTTGAACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_f12.b1 MSMg01no059_f12.b1 CHROMAT_FILE:
MSMg01no059_f12.b1 PHD_FILE: MSMg01no059_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:49 2005
         (456 letters)



>mm_chr17_85446359_85447214
          Length = 856

 Score =  770 bits (398), Expect = 0.0
 Identities = 436/454 (96%), Gaps = 9/454 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcattttacttatctgacttatttggcttcattaagagcatcatgcaattttaga 62
           ||||||||||||         |||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggaattcatttt---------acttatttggcttcattaagagcatcatgcaattttaga 618

                                                                       
Query: 63  ttttcttcaggcatacaatgtactgctaagattcacggggacggccacacactgctgtaa 122
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 617 ttttcttcaggcatacaatgtactgctaagattcacggggatggccacacactgctgtaa 558

                                                                       
Query: 123 cttggtcaatgtaacatatcccgtgacacacaacacaactccaacattttggagtatgtg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttggtcaatgtaacatatcccgtgacacacaacacaactccaacattttggagtatgtg 498

                                                                       
Query: 183 tggggactactgtctacctaaccagaggaactacggtaactacagaagagtgatcaacca 242
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 497 tggggactactgtctacctgaccagaggaactacggtgactacagaagagtgatcaacca 438

                                                                       
Query: 243 gaggaatccggtaggtagcctgtgagaatcactattgtagtgcctcaaggaatgtagctt 302
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 437 gaggaatccgggaggtagcctgtgagaatcactagtgtagtgcctcaaggaatgtagctt 378

                                                                       
Query: 303 agacaacgagtaggcttggtttggagctccgtaaccctgagtcctgaggctcacctaatg 362
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 377 agacaacgagtaggcttggtttggagctccgtaaccctgactcctgaggctcacctaatg 318

                                                                       
Query: 363 gaaatggcgacgcctcttttgcctgtttattgaaagactcagtgctaattcccttctgtt 422
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaatggtgaggcctcttttgcctgtttattgaaagactcagtgctaattcccttctgtt 258

                                             
Query: 423 cagactggtcttgatcacctaggtaagtcccggg 456
           |||||||| |||||||||||||||||||||||||
Sbjct: 257 cagactggccttgatcacctaggtaagtcccggg 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)