Query= MSMg01no059_k20.b1 MSMg01no059_k20.b1 CHROMAT_FILE:
MSMg01no059_k20.b1 PHD_FILE: MSMg01no059_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:14 2005
(572 letters)
>mm_chr17_55225414_55226386
Length = 973
Score = 928 bits (480), Expect = 0.0
Identities = 519/532 (97%), Gaps = 1/532 (0%)
Strand = Plus / Minus
Query: 1 ggggacctgagttcatgctgtgattagtcaggatgttgtgatggtttcccactgccacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 536 ggggacctgagttcatgctgtgattagtcaggatgttgtgatggtttcccactgctacta 477
Query: 61 tggctattctctgggcaatgataatatggttgtgggggtattgtgcaaggcaaagggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggctattctctgggcaatgataatatggttgtgggggtattgtgcaaggcaaagggcat 417
Query: 121 agtgcccaacagttgttaaactgcgtttatcttgccaactacttatcttctcatttctct 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 416 agtgcccaacagttgttaaactgcgtttatcttgccaacaacttatcttctcatttctct 357
Query: 181 gtctcttcattttcatcaaataaacactttgctgacacattactttctgctgtgtgttcg 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcctcttcattttcatcaaataaacactttgctgacacattactttctgctgtgtgttca 297
Query: 241 ttttgtgctgtctattctaaccttcaacac-gtggtcctgcccatcacagagacaactgc 299
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 296 ttttgtgctgtcaattctaaccttcaacacagtggtcctgcccatcacagagacaactgc 237
Query: 300 actactgttttaggactttctgattgtgtacaagttccaacatccatcaattgctactag 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 actactgttttaggactctctgattgtgtacaagttccaacatccatcaattgctactag 177
Query: 360 ctcctcatctaagggaggggcttcatgaacctttcttctttgcatgctgagattttaact 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 176 ctcctcatctaagggaggggcttcatgaacctttctcctttgcatgctgagattttaact 117
Query: 420 agtttgatcccatagagctcttgtgcatatactcatagctgctataaattctgtgcaatg 479
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 116 agtttgatcctatagagctcttgtgcatatactcatagctgctgtaaattctgtgcaatg 57
Query: 480 gtcctattgtgtcctacaaatactgatatgaagttattatctactaactttg 531
||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 56 gtcctattgtgtcctacaaatcctgatacgcagttattatctactaactttg 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_k20.g1 MSMg01no059_k20.g1 CHROMAT_FILE:
MSMg01no059_k20.g1 PHD_FILE: MSMg01no059_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:14 2005
(575 letters)
>mm_chr17_55040268_55041242
Length = 975
Score = 1096 bits (567), Expect = 0.0
Identities = 573/575 (99%)
Strand = Plus / Plus
Query: 1 attaaggtgttgtgccagtagagagtggataataaaaatgaaatgatgttaatgataaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaggtgttgtgccagtagagagtggataataaaaatgaaatgatgttaatgataaaa 260
Query: 61 acaagtagattgggggtaatgacttggagcactatgttgtgaaactttataatgggatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagtagattgggggtaatgacttggagcactatgttgtgaaactttataatgggatca 320
Query: 121 accagacaattgtaatgtggattagtgatgtgtgctccaaatgaaaaggcagaggtacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagacaattgtaatgtggattagtgatgtgtgctccaaatgaaaaggcagaggtacat 380
Query: 181 tgcaatgtgttactgtggccactggtaatcaagcccagtcagatgacaaatggtaggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaatgtgttactgtggccactggtaatcaagcccagtcagatgacaaatggtaggaag 440
Query: 241 ttgttgagttatattttaaagtttaaaattgcaggttaggggaagctcagttgataaagt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttgagttagattttaaagtttaaaattgcaggttaggggaagctcagttgataaagt 500
Query: 301 ttcttctgtacaaggtcagaatcccagcctctatattaagttggatgcctgaaattctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttctgtacaaggtcagaatcccagcctctatattaagttggatgcctgaaattctag 560
Query: 361 gaataggaaatcaaaaataaaaatatatcttgggcatattggcaagccagcctagctgag 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gaataggaaatcaaaaataaaaatatatcttgggcatattggcaagtcagcctagctgag 620
Query: 421 tttgttagattagccttgtgggggcattgtgaattgctttcacagctttctggagatcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgttagattagccttgtgggggcattgtgaattgctttcacagctttctggagatcca 680
Query: 481 ataaaggaagtaatttcttctgggttatcaatgtttatccaaaataactgcatagaaagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaggaagtaatttcttctgggttatcaatgtttatccaaaataactgcatagaaagc 740
Query: 541 acatggaggcagcaagcatatataacctaaaatag 575
|||||||||||||||||||||||||||||||||||
Sbjct: 741 acatggaggcagcaagcatatataacctaaaatag 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
