BAC Information

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BAC

Clone NameMSMg01-060J14
Chromosome17 (Build37)
Map Location 67,646,530 - 67,646,770
singlet/doubletsinglet
Overlap genePtprm
Upstream gene1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J14.T7 (MSMg01no060_j14.b1)MSMg01-060J14.TJ (MSMg01no060_j14.g1)
ACCAG287005AG287006
length813713
length of high quality
(start - end)
66 (72 - 137)241 (69 - 309)
definitionCHROMAT_FILE: MSMg01no060_j14.b1 PHD_FILE: MSMg01no060_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:22 2005CHROMAT_FILE: MSMg01no060_j14.g1 PHD_FILE: MSMg01no060_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAAGGAGCCGN
GGAATTCTACTGATTTCACGAAGACCATTCAATATACATGTCTGCAAAGT
CCATTTGACTTACAATATGATTTACCTATGATATTCCTACCTGGGCTTTT
TGTTGAGAGTGGCAAATTGACCTTACAGACTATTATTATGCTGAGACTCA
TCTGTGTCTCTAAATCACTAGGTCGTTTCATAAAATTATCGCACCCTGTT
TTGGTCCTTATGATTCACAATTTGTCTGATCTGATTGTGCTCTGCCCAGA
ACGATGCCTCTTATGCCAATGTATTTGATATCACTCTTTTCTTTCCCCTT
TATTTTATTCCCTGCCCCCACTTTTACGTTGACGCCTTTGATCCTCCTGT
TACTTGTTTTGTCGTTCAACCAAGTAACTCCACGTTTTCTATTTCCCCCC
CTTTGCGATAAGCTACACATTCCTCGTCTATTACCCCCCCACCCCTCTGT
TTGTACATTTTTCCCCTTCTACCCCATTTGCCTCGCATTTTCCTATGCCC
CCACCCCTCTCACTTGTTACGCCGCGTTCCTCTTAAAACGCACCCTTCCC
AATTATCTTCAAAATTTACCCCCCCCTCCCCCTTTTTTTTTTTTATATTC
TATATTCTCCCTATTCTGCCACCCCCCTCCCCTCCCACCTTTTACCCCTC
TTCCCCTTTATTTTAATTTCCCGCCAATCAACGCCCGAATACCAAGTTTC
TCCCCATCCTTTCGCCTCTTCTTCTTTTTTTTTCCCTATACCCCCCTTTT
TTTCCCCCCTCAT
TGAAGCGGGTAGGCTGGCGGCGCCTGTTTCCAAATTTAGGTGAACTATAG
AAGTTTACGAGAAACTCTCAGCCAGGGAAGATAACAGCGCAAAAGGCTCG
GCAGAAAGCTCTTGGCCAGAACTGTCAGCCATGGTCTGACTTGGGCTCTC
AGCGCGGCACGTTGGGACTGCATACATGACAAGCTCATAGATAACCTGAC
CTCTTTGTTCACAACACTACTGGCTACTTGTCCTGTGAGACAGCATATAA
CTGATGTGACCAATGTGCTTTCCTTCCACACACACTCTCCTGTCCACACC
CCCTTCCAGGCTGTTTTTTCGCGCCCATCATAAAACCTTGCCCCACACAT
CGTTATATGGCAATCTTCCTTCCCCCTTAGTCTTATGTAACATACTCCTG
ATCTTCTAACCCCCATTCACCCCCCACATTGCTGCTCCCTTTGATATGTA
ACCCACATCCTTGCGTCCCCGTGCCATCCCATAGCCATCCACTGCTTCCA
TTTTTCCCCCCTCCTCTTAACTCCCCTCCTATCCCTTTTACCCTGCACCC
CATTATCCCCCCCTAACCCCTCCCCCTCCTTTTTCCCTCTTCTATTCCTT
CCCTTTTTCCTCTTTGTACCCTCCCATCCTTCTCCATACATTATCTTTCT
CTTCCTCTTCCTATCCCCTCTTCTCTATTTTCCCCCCTCCCTCCCCCCCT
CTTTCAATCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j14.g1 MSMg01no060_j14.g1 CHROMAT_FILE:
MSMg01no060_j14.g1 PHD_FILE: MSMg01no060_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:22 2005
         (241 letters)



>mm_chr17_67646330_67646970
          Length = 641

 Score =  389 bits (201), Expect = e-113
 Identities = 231/241 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccagggaagataacagcgcaaaaggctcggcagaaagctcttggccagaactgtcag 60
           |||||||||||||||||||||||||||||| |||||||||||| || | |||||||||||
Sbjct: 201 cagccagggaagataacagcgcaaaaggcttggcagaaagctcatgactagaactgtcag 260

                                                                       
Query: 61  ccatggtctgacttgggctctcagcgcggcacgttgggactgcatacatgacaagctcat 120
           | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 261 ctatggtctgacttgggctctcagcgtgggacgttgggactgcatacatgacaagctcat 320

                                                                       
Query: 121 agataacctgacctctttgttcacaacactactggctacttgtcctgtgagacagcatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 321 agataacctgacctctttgttcacaacactactggctacttgtcctgtgagacagcagaa 380

                                                                       
Query: 181 aactgatgtgaccaatgtgctttccttccacacacactctcctgtccacacccccttcca 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aactgatgtgaccaatgtgctttccttccacacacactctcctggccacacccccttcca 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)