Query= MSMg01no061_b02.b1 MSMg01no061_b02.b1 CHROMAT_FILE:
MSMg01no061_b02.b1 PHD_FILE: MSMg01no061_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:57 2005
(497 letters)
>mm_chr17_87394973_87395868
Length = 896
Score = 926 bits (479), Expect = 0.0
Identities = 491/495 (99%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 3 ggaattcctcgcgtttatctctataatcttggagaaaggagtaatttctaaatgcataaa 62
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcctcgcgttgattt-tataatcttggagaaaggagtaatttctaaatgcataaa 261
Query: 63 agcaaaagttataaatgcaggttatctcagtacataaatacgtgctattacactggatat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agcaaaagttataaatgcaggttatctcagtacataaatacgtgctattacactggatat 321
Query: 123 tagtaatcagattgctgtgtagggcattaaccataaaatgatttaatcagaagatggcat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagtaatcagattgctgtgtagggcattaaccataaaatgatttaatcagaagatggcat 381
Query: 183 aaaccctagtggaaaagtgctaagaacattcatccgaagtcaccaagtctgaggaaactc 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agaccctagtggaaaagtgctaagaacattcatccgaagtcaccaagtctgaggaaactc 441
Query: 243 caaggagaaagaatagaaactgtgtgttctagctaggcataggggcataggcctttaatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caaggagaaagaatagaaactgtgtgttctagctaggcataggggcataggcctttaatt 501
Query: 303 tcagcactcagggggcagaggaaggtggagctctgtgagttcaaggctagctggtctata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcagcactcagggggcagaggaaggtggagctctgtgagttcaaggctagctggtctata 561
Query: 363 gagtaagtttgaggacagccagggctacatagggaaactgtctcaaaaagcaagccagca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gagtaagtttgaggacagccagggctacatagggaaactgtctcaaaaagcaagccagca 621
Query: 423 aacaaaagaaattgtgttttcttactcggcaggtctaacaacccagtagaacacgttaag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aacaaaagaaattgtgttttcttactcggcaggtctaacaacccagtagaacacgttaag 681
Query: 483 accctaccgtgctct 497
|||||||||||||||
Sbjct: 682 accctaccgtgctct 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_b02.g1 MSMg01no061_b02.g1 CHROMAT_FILE:
MSMg01no061_b02.g1 PHD_FILE: MSMg01no061_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:57 2005
(477 letters)
>mm_chr17_87556781_87557661
Length = 881
Score = 781 bits (404), Expect = 0.0
Identities = 460/484 (95%), Gaps = 13/484 (2%)
Strand = Plus / Minus
Query: 1 attttttaggccagcctggccttgagctcggagctccgtcttcctctacctcctgagtgc 60
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 attttgtagaccagcctggccttgagctcggagctccgtcttcctctacctcctgagtgc 698
Query: 61 taggggaaaatgcatacgccactaaccctggctttgcctaccagaaatttatggtaagac 120
|| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ta-gggaaaaggcatgcgccactaaccctggctttgcctaccagaaatttatggtaagac 639
Query: 121 cctattgctaaagtcattgcacattttggtcacagggcataaagaaatcgagatgcagct 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 638 cctattgctaaagtcattgcacattttggccacagggcataaagaaatcgagatgcagct 579
Query: 181 gagctggacgcatcctcccaatgaagtcttactcagctgtaactcctataagctactaac 240
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 578 gagctggacgcgtcctcccaatgaagtcttactcagctgtaactcctgtaagctactaac 519
Query: 241 actgccagagaagacacgccctctgggctcgaagtcctcggggaggtcagacttc----g 296
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 518 actgccagagaagacacgccctctgggctcgaagtccttggggaggtcagacttccgctg 459
Query: 297 gctgcggggcgcaggggatgccgggagaccggaggtaggaggcgccacacatccagaatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gctgcggggcgcaggggatgccgggagaccggaggtaggaggcgccacacatccagaatc 399
Query: 357 cctctgaagcagcagtggcttgcctggcatgggaatatatatccaag---ctttctgatt 413
|||||||||||| |||||||||||||| ||||||||| | |||| ||||||||||
Sbjct: 398 cctctgaagcagtagtggcttgcctggtatgggaata-a----caaggtgctttctgatt 344
Query: 414 ggatctgaagtctgctacacaggagtaaatgcatgcctgttacacaaatctgttcaagag 473
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 343 ggatctgaagtctgctacacaggagtaaatgcatgcctgttacgcaaatctgttcaagag 284
Query: 474 ccct 477
||||
Sbjct: 283 ccct 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 881
Length adjustment: 10
Effective length of query: 467
Effective length of database: 871
Effective search space: 406757
Effective search space used: 406757
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
