BAC Information

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BAC

Clone NameMSMg01-061C23
Chromosome17 (Build37)
Map Location 45,193,921 - 45,194,287
singlet/doubletsinglet
Overlap geneSupt3h
Upstream geneEnpp5, Enpp4, Clic5, Runx2, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061C23.T7 (MSMg01no061_c23.b1)MSMg01-061C23.TJ (MSMg01no061_c23.g1)
ACCAG287453AG287454
length735721
length of high quality
(start - end)
30 (163 - 192)367 (73 - 439)
definitionCHROMAT_FILE: MSMg01no061_c23.b1 PHD_FILE: MSMg01no061_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:05 2005CHROMAT_FILE: MSMg01no061_c23.g1 PHD_FILE: MSMg01no061_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGACCCGGCGGAA
NNCNNNNGAATGTTTCCAACAGGACGGCCGACACNAAAGCAGAAGCCACC
GCAGGACAAACCAAACATGCCGGCCCCAAAAAGACAGGACACAGGAGACA
GGNCANCAGNAGGCCAGGCCCAGAGGGGAAACCCACAGGAGGCAACANNG
GNGGGAGAACTGGCCCACACAGCCCACCGAAGACAGAGGCAGAACAGACG
CGGGTTTACCAGCAGCATCTTTGACAAATGAGGAACGGTGATCTGGTTGA
AAGAAAAAAGACCGGAGCAATTTTTTTTTTGGAAAGGCGAAGCGGGCAAC
CCCGGGGAGAGGGATTCGGACCCCCCCAAGAACAAAAAAGAAAACAGGCG
AACATTCAAGAGAGAACTCGGACAATTGGGGTGCATCCCGATTACCCAGA
CAGACGTTGCAGGCATAATGAGCGGGTGCCCGGAAGGAAACAGAGACTAC
TATGTGAACTGACGTAACATAGAACACATGAGAGGTAATCACATCTGAAT
GAAACATTGGGGTCAAGAGGGGAAACAGACAACAAATGGGTGTGAGAAGA
AAGTGTACACAAACATGTGAGAACCGTGGTGGGAAAAAAACGGCGGAACA
CACATAGAAAAATTATGTTATTATTGAAATGGGGGGGATAAACAAGGGTC
AATAAAAGGGGACAAACAAAAAGGGGTAAAAATCA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCAATCAAGGATGCAAGAAATGCTGT
CCTACCATCAGGAAGGATAGCCTCAGAGAGTTTGTTCATATGGAAGGATA
GTATTTCTCTTTCCCACCAGGGAACTGAAGACTACAGTTTCAGTTTCATA
TGGCAGGAAAGCACATAAATGCCAACCACTGAAAGCAGTGGACGGCAGAG
ACTTCTTGTCTTGAGTAACTTAAGATGCTCCTTCAGCAGGCTAACTCAGT
GTCCAGAGGTCATCTTAGTCACGAGTTTAAATATTATCATTGGGCAATTC
TGTTGGATTTTACTTGTTTGAAACATTACATTTCCCCAGGTACAGAGTAC
AGTTTAAGATTGGGCGATGATACTCTGCCAGGAACCCCAAGCTCACTGAG
AGTGGCAGCAGGAACTGCTTCCAGGTAAGGAGCCTTTTGTACCCCGGGTT
GGAAACCTATAATTAAAGCAAGTTCACGGTGCGTGGGCCATCGGTTGAGT
TTACATTTCAGGCGAGACGTGCCAACTCCTCTAAGCTCTTGGGCCTGGAA
AACGTACTGAGGANACAAAGTGTGAAAGGCAAAATGTCAAAGATTATTCA
TCTGTTTAAGGAAACCTGTCTGCCGACAAAAATTCCCGCAACAAGATAAA
GGGACGGGAGACAACATTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_c23.g1 MSMg01no061_c23.g1 CHROMAT_FILE:
MSMg01no061_c23.g1 PHD_FILE: MSMg01no061_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:05 2005
         (367 letters)



>mm_chr17_45193721_45194487
          Length = 767

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaatcaaggatgcaagaaatgctgtcctaccatcaggaaggatagcctcagagagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctcaatcaaggatgcaagaaatgctgtcctaccatcaggaaggatagcctcagagagtt 508

                                                                       
Query: 61  tgttcatatggaaggatagtatttctctttcccaccagggaactgaagactacagtttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgttcatatggaaggatagtatttctctttcccaccagggaactgaagactacagtttca 448

                                                                       
Query: 121 gtttcatatggcaggaaagcacataaatgccaaccactgaaagcagtggacggcagagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtttcatatggcaggaaagcacataaatgccaaccactgaaagcagtggacggcagagac 388

                                                                       
Query: 181 ttcttgtcttgagtaacttaagatgctccttcagcaggctaactcagtgtccagaggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcttgtcttgagtaacttaagatgctccttcagcaggctaactcagtgtccagaggtca 328

                                                                       
Query: 241 tcttagtcacgagtttaaatattatcattgggcaattctgttggattttacttgtttgaa 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcttagtcacgagtttaagtattatcattgggcaattctgttggattttacttgtttgaa 268

                                                                       
Query: 301 acattacatttccccaggtacagagtacagtttaagattgggcgatgatactctgccagg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 267 acattacatttccccaggtacagagtacagtttaagattgggcaatgatactctgccagg 208

                  
Query: 361 aacccca 367
           |||||||
Sbjct: 207 aacccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)