Query= MSMg01no061_f22.b1 MSMg01no061_f22.b1 CHROMAT_FILE:
MSMg01no061_f22.b1 PHD_FILE: MSMg01no061_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:19 2005
(457 letters)
>mm_chr17_50808679_50809538
Length = 860
Score = 733 bits (379), Expect = 0.0
Identities = 424/439 (96%), Gaps = 3/439 (0%)
Strand = Plus / Minus
Query: 4 gaattccttcttgttc-tatatattcctataagggggtggggtagaggaagaaaagagga 62
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 gaattccttcttgttcatatatattcctataagggggcggggtagaggaagaaaagagga 380
Query: 63 gggaaatgatgtaattataatatcaaaagaaata-cttttaaaagctgtt-ttgtcgtag 120
||||||||||||||||||||||||||||||| || ||||||||||||||| | ||| |||
Sbjct: 379 gggaaatgatgtaattataatatcaaaagaagtaccttttaaaagctgttctagtcatag 320
Query: 121 tctctttcgggagcactgagtggtgctggaagctgtgtgtgcacccgtagacaacagtgc 180
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 tctctttcgggagcactaagtggtgctggaagctgtgtgtgcacccttagacaacagtgc 260
Query: 181 atcccactcctcatcagagaaacctctctttccccagagaccactacagaaacgcagttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atcccactcctcatcagagaaacctctctttccccagagaccactacagaaacgcagttt 200
Query: 241 cagaggggatcaagaacagcaactcagctactgattatatctgagctttgcagcaaagat 300
||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 199 cagaggggatcaataacagcaactcagctacagatcatacctgagctttgcagcaaagat 140
Query: 301 tctggctgctttgtgcccgcgccccaagaagttacctgcagctacattaaaaatgtattg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 139 tctggctgctttgtgcccgcgccccaagaagttacctgcagctacattaaaaatgtatgg 80
Query: 361 actaatgttttttggccataagaaatttcaagacagataatgttgagtctatggcattgt 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 actaatgttttttggccagaagaaatttcaagacagataatgttgagtctatggcattgt 20
Query: 421 tattactaaaaatacttag 439
|||||||||||||||||||
Sbjct: 19 tattactaaaaatacttag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 860
Length adjustment: 10
Effective length of query: 447
Effective length of database: 850
Effective search space: 379950
Effective search space used: 379950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_f22.g1 MSMg01no061_f22.g1 CHROMAT_FILE:
MSMg01no061_f22.g1 PHD_FILE: MSMg01no061_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:19 2005
(565 letters)
>mm_chr17_50631184_50632148
Length = 965
Score = 1054 bits (545), Expect = 0.0
Identities = 560/565 (99%)
Strand = Plus / Plus
Query: 1 ttcaaaattcaggctttttatttatagttgtacaaaaatacattatcatagagttgaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaaattcaggctttttatttatagttgtacaaaaatacattatcatagagttgaaaa 260
Query: 61 aatattacacagtatttcatctgggctttttattttattatgagtttaatatttttgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatattacacagtatttcatctgggctttttattttattatgagtttaatatttttgtat 320
Query: 121 ctattgctagtatcttcagattcattgtaagagttttattttgtggatttttttccccta 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 321 ctattgctagtatcttcagattcattgtaagagttttattttatggattttttcccccta 380
Query: 181 atctggcctctatttgatgccatttcaatgttttcagtgttttgacataaataataccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctggcctctatttgatgccatttcaatgttttcagtgttttgacataaataataccac 440
Query: 241 gatgacaaaatcatacacacatatatatgtatacttagatatacatatttctatgttaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgacaaaatcatacacacatatatatgtatacttagatatacatatttctatgttaca 500
Query: 301 ttatgcagaatacaattctattatgtgtcaacacatacagtttgctccacatgggtttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatgcagaatacaattctattatgtgtcaacacatacagtttgctccacatgggtttta 560
Query: 361 tgaatgttatcagtcacagtgaaatatcaggagcctgaataaacatatacaacatttgca 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaacgttatcagtcacagtgaaatatcaggagcctgaataaacatatacaacatttgca 620
Query: 421 aaatgcacataaaattttgaagatggcatataagaaaaatgtgaagtaaatcaccaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgcacataaaattttgaagatggcatataagaaaaatgtgaagtaaatcaccaaaaa 680
Query: 481 ctctcatattgaatgcactttgaaatattttaatagattaaaaatatttaaattatttcc 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctcatgttgaatgcactttgaaatattttaatagattaaaaatatttaaattatttcc 740
Query: 541 acctgcttttttgtaattttcaaaa 565
|||||||||||||||||||||||||
Sbjct: 741 acctgcttttttgtaattttcaaaa 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
