Query= MSMg01no062_l09.b1 MSMg01no062_l09.b1 CHROMAT_FILE:
MSMg01no062_l09.b1 PHD_FILE: MSMg01no062_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:35 2005
(685 letters)
>mm_chr17_55179761_55180845
Length = 1085
Score = 1234 bits (638), Expect = 0.0
Identities = 673/692 (97%), Gaps = 14/692 (2%)
Strand = Plus / Plus
Query: 1 gtcaaaatcaatccttagaggctcttataataaaacaatattgagggaaagcacacagat 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 gtcaaaatcaatccttagaggctcttataat-aaacaatattgagggaaagcacacagat 259
Query: 61 ccatacacccgactaaagcaaggacagatttggagcattcattattacaggatgccacgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccatacacccgactaaagcaaggacagatttggagcattcattattacaggatgccacgg 319
Query: 121 ttccaggagactaagtttctgtgaacttttcgcctcagggctgcatccaggcttttgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttccaggagactaagtttctgtgaacttttcgcctcagggctgcatccaggcttttgggc 379
Query: 181 ctgtcgcgtggatcactactggagtgggtgtggcagctttattaacacatattggcaatc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgtcacgtggatcactactggagtgggtgtggcagctttattaacacatattggcaatc 439
Query: 241 cactgggtgctgtgttttattgtatattttttt-------attaacgttatgttccacta 293
|||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 440 cactgggtgctgtgttttattgtata------tccaacacattaacgttatgttccacta 493
Query: 294 tccatgaaaaacaactaagggtgaggacatataaggcacatgagcaagcaactctcaagt 353
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 494 tccatggaaaacaactaagggtgaggacatataaggtacatgagcaagcaactctcaagt 553
Query: 354 atatgaaaattagccttaatagaaggaattatttgttaattataatgatgattctaatta 413
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atatgaaaattagtcttaatagaaggaattatttgttaattataatgatgattctaatta 613
Query: 414 atgctatgtgtttaataagcaagaccatagacccatgtgttgaaggattgatattcagtc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atgctatgtgtttaataagcaagaccatagacccatgtgttgaaggattgatattcagtc 673
Query: 474 tatgttgtcatgaggaggtggtggaacatttaaaatgtagtgattattagcaggtcatgt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tatgttgtcatgaggaggtggtggaacatttaaaatgtagtgattattagcaggtcatgt 733
Query: 534 cattgggtacatatccagtattgagcgacatactggaactccagcctcattgtcaatctc 593
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 734 cattgggtacatatccagtattgagggacatactggaactccagcctcattgtcaatctc 793
Query: 594 ttttatttccacaatatgaaataatattttactcttccacacacacatccatgattttct 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttttatttccacaatatgaaataatattttactcttccacacacacatccatgattttct 853
Query: 654 tcttatagtgaaaggaaataaaacttgagacc 685
||||||||||||||||||||||||||||||||
Sbjct: 854 tcttatagtgaaaggaaataaaacttgagacc 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_l09.g1 MSMg01no062_l09.g1 CHROMAT_FILE:
MSMg01no062_l09.g1 PHD_FILE: MSMg01no062_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:35 2005
(721 letters)
>mm_chr17_55309184_55310307
Length = 1124
Score = 1286 bits (665), Expect = 0.0
Identities = 708/724 (97%), Gaps = 3/724 (0%)
Strand = Plus / Minus
Query: 1 accagagacactgaaatttatagaggaccatgtggggaaaagcccccaagatatgggcac 60
||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||
Sbjct: 973 accagagacactgaaatttatagaggagaaagtggggaaaagcctcgaagatatgggcac 914
Query: 61 tggggaaaaattcctaaacagaacagcaatggcttgtgctataagctggcctctccaggc 120
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 913 tggggaaaaatttctaaacagaacagcaatggcttgtgctataagctgtcctctccaggc 854
Query: 121 acatacatatgatatacattcacacagacacacatgtgcacacatagtaaagtaaaataa 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 853 acatacatatgatatacattcacacagacacacacgtgcacacatagtaaagtaaaataa 794
Query: 181 gccttgacacagaagcaccagaacatggttgggcatacaagtcaagagccacaccctggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 accttgacacagaagcaccagaacatggttgggcatacaagtcaagagccacaccctggt 734
Query: 241 tccttatgctt---ctcctgcctccactctgggatcaaccactgtagatgtcagctagtt 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tccttatgcttctcctcctgcctccactctgggatcaaccactgtagatgtcagctagtt 674
Query: 298 tctggaatattccaaaattgagttgtatgtttgagtatttgtgcttgctctctttagcac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tctggaatattccaaaattgagttgtatgtttgagtatttgtgcttgctctctttagcac 614
Query: 358 tcttttctatgtgcctggccctttctctgcttttggcctctacagtattattttccctgg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tcttttctatgtgcctggccctttctctgcttttggcctctacagtattattttccctgg 554
Query: 418 agactgtctttctggacagtcaatcaaagccatctgctttacaacaccataatcagccat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agactgtctttctggacagtcaatcaaagccatctgctttacaacaccataatcagccat 494
Query: 478 tatcttgttggcatatgcatacctcaattatctgtctcctttcccaaggctcctgcatta 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 493 tatcttgttggcatatgcatacctcaattatctgtctccttttccaaggctcctgcatta 434
Query: 538 aggcatgtccatctccattgttctaaacatgatgctcccagtgtcttacaacatcagaaa 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aggcatgtccacctccattgttctaaacatgatgctcccagtgtcttacaacatcagaaa 374
Query: 598 tatgtagtcttacttcaatgttgaataaatgaatgaatgattacaagtaaaacaaacaaa 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatgtagtcttacttcagtgttgaataaatgaatgaatgattacaagtaaaacaaacaaa 314
Query: 658 caaaaagaattgacaaatgggacctcataaaattgcaaagcttctataaggcanaagaca 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 313 caaaaagaattgacaaatgggacctcataaaattgcaaagcttctataaggcaaaagaca 254
Query: 718 ctgt 721
||||
Sbjct: 253 ctgt 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1124
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1114
Effective search space: 792054
Effective search space used: 792054
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
