Query= MSMg01no062_p02.b1 MSMg01no062_p02.b1 CHROMAT_FILE:
MSMg01no062_p02.b1 PHD_FILE: MSMg01no062_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:04 2005
(457 letters)
>mm_chr17_69015131_69015989
Length = 859
Score = 853 bits (441), Expect = 0.0
Identities = 454/459 (98%), Gaps = 2/459 (0%)
Strand = Plus / Plus
Query: 1 taaaaacacgcttttgcattaacaataggtaacatggacataaagaaagaaatagcttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaaacacgcttttgcattaacaataggtaacatggacataaagaaagaaatagcttgt 260
Query: 61 ttttatagtataaagcctctgcagggaatgatagtatgcttgtctcataagaaaatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatagtataaagcctctgcagggaatgatagtatgcttgtctcataagaaaatgttt 320
Query: 121 ggaaagttggattttacactcccttaagacacagatacaaagttcatgggttgctctaaa 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagttggattttacactccctaaagacacagatacaaagttcatgggttgctctaaa 380
Query: 181 ggacacagctaagtctgaagatgctggagcaatttggagactgaaacagtaaaatttctt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacacagctaagtctaaagatgctggagcaatttggagactgaaacagtaaaatttctt 440
Query: 241 tttttttttt--caaagagctttcaatcatatattgtcctaggcccctctatccagacag 298
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ttttttttttttcaaagagctttcaatcaaatattgtcctaggcccctctatccagacag 500
Query: 299 ccctgctgttttggcatttcattaggttgctgagaggtaaggtattttaaaataggaatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctgctgttttggcatttcattaggttgctgagaggtaaggtattttaaaataggaatg 560
Query: 359 cagcgcacctatgtctgagctgaagagagagccaggatgtgctgtcttgaatctatgtaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcgcacctatgtctgagctgaagagagagccaggatgtgctgtcttgaatctatgtaa 620
Query: 419 atgatccttatctgtatccccaggcagttatttgggtag 457
|||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgatccttatctgtatccccaggcagttatttgggtag 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 859
Length adjustment: 10
Effective length of query: 447
Effective length of database: 849
Effective search space: 379503
Effective search space used: 379503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_p02.g1 MSMg01no062_p02.g1 CHROMAT_FILE:
MSMg01no062_p02.g1 PHD_FILE: MSMg01no062_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:04 2005
(623 letters)
>mm_chr17_69163012_69164034
Length = 1023
Score = 963 bits (498), Expect = 0.0
Identities = 516/522 (98%)
Strand = Plus / Minus
Query: 102 attctgcagatgaaaatggctcatgtgatacttgggaaacctcgcttaatgatggcaggg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 attctgcagatgaaaatggctcatgtgatacttgggaaacctcgcttaatgatggcaggg 964
Query: 162 agtgagtaaatgtgcctcttgtcacacggaatgcagacctttatttattttctgtattta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 agtgagtaaatgtgcctcttgtcacacggaatgcagacctttatttattttctgtattta 904
Query: 222 tttcctacagctccggagatggaattcaggacatttgcattctggacaagcgttgtgttt 281
|||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 903 tttcctgcagctccggagatggaattcaggatatttgcattctggacaagcgctgtgttt 844
Query: 282 ctgagctatgccccaagccctatcgccatgctttaaagctgcacttcacaagagggaccc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ctgagctatgccccaagccctatcgccatgctttaaagctgcacttcacaagagggaccc 784
Query: 342 agtgtccctgagagctcagccagcgctctgttccctgtagatactggtactactgatagg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agtgtccctgagagctcagccagcgctctgttccctgtagatactggtactactgatagg 724
Query: 402 gaatccacagttggggagggagcctttcctgtagggtaaaggaactaaggggagcaagta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaatccacagttggggagggagcctttcctgtagggtaaaggaactaaggggagcaagta 664
Query: 462 gctaatatgttcatttctctatctctggcccaattaccttcattcatccaggtagacatg 521
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gctaatgtgttcatttctctatctctggcccaattaccttcattcatccaggtagacatg 604
Query: 522 atagccatcttgtacatgtgtatttgtattttaaatgagacctcagttggggtcagtgat 581
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 603 atagccatcttgtacatgtgtatttgtattttaaatgagaactcagttggggtcagtgat 544
Query: 582 gtcttagaaagtattagaaaaggtgtcttattatgcatggtt 623
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 gtcttagaaagtattagaaaaggtgtcttactatgcatggtt 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
