BAC Information

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BAC

Clone NameMSMg01-062P05
Chromosome17 (Build37)
Map Location 60,301,033 - 60,385,571
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062P05.T7 (MSMg01no062_p05.b1)MSMg01-062P05.TJ (MSMg01no062_p05.g1)
ACCAG288805AG288806
length1,1531,145
length of high quality
(start - end)
775 (84 - 858)809 (88 - 896)
definitionCHROMAT_FILE: MSMg01no062_p05.b1 PHD_FILE: MSMg01no062_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:05 2005CHROMAT_FILE: MSMg01no062_p05.g1 PHD_FILE: MSMg01no062_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,301,033 - 60,301,795)(60,384,760 - 60,385,571)
sequence
CCCTTTCTTTNNNNNTTCAGTGGGCGCTATAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCACTGCTATTTTTACTCCTTTCAATTTTTTATATACCAGT
GGTATTATTGCCATATCCCTAATATATCAGTGTCTTATTATGGCTTGATA
GAAAATTTTGAATTCAAGGTTATCTTAGTTTTTCATTTTTTAATTGATCT
TGGCAAATTGTGTATTTTTTTCACAAAACATTGAGTTGATTTATAGATTT
CTTCAAAGCAGTCTTTTAGAACTTTTTAAATTATGCACAATCTATAAATA
AATTTGAGAATTTCTAACTGCAACTTTAATCTTTCAGCTATATATATATA
TATATACATATATATAGCTGAAAGATATATATTTTTATATATATATAAAT
ATATATACATATATAAATATATATACATATATAAATATATATACATATAT
ATATTTCTATAAAGGTAGGTAGATATTGGTCTTCATAAATTTCATAAACT
TTCTTACAAGATAATATGTTATAAAATGTTCTTAAAATATTTGTTTGTAA
TTTCTTATGTCAGCAGTATTATAAATAGTTTTAAATGGAGATACAATCTC
TGTAATAAAAGTTATTCAATATGTCAAAAATGTTTACACAGGTTACATTT
TTAAGAGATCCCATGTGAATTTCCCTGTAGTTGTCAAGCACTGGCCTCAT
TAACCAAACCCTTTCCTCATGTTACCCTTGGTTTATTCTTTCCATGTCTC
TACATATTTTATGCCCTCTTGTTTCACAAGCTGCCCTTTATCCTCAACTG
AGCCCTCCTCCTCTTCCCACCCTGTCAGATTACTCTTCCATTTTAGAAAA
ATCTTCATTCTTTTCCCATTATCATCCAGGGTAGAACAGAAGGTGGCCGG
GAGTACTATGGCCACAGAGGCATGCTAACAGCTTACCCTGGCAGTCCAGT
TAAAGACAACATACTTTGGAAAGTAATGATATTTGAAGTGAAGCCTTCAA
ATGACAGGGGTTCTGCCGGAAAGAAGGCATTTTTCTTGAACAAAACAAAA
AACCTTGGGATAAAGAAATTGTGGCCCAAAATTACCAGGGGGTGAATTTT
AATCTGTAAACCCCAGCCCTTGGGGGAAATTGAGAACCTTTACCCTCTGA
AAA
NCCTTTTCTTTNNNNAACGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAATATTGTTTCAAAATTAG
AAAGTTTTAGAAAATATCTTGAAAGATTCCTGAGGCATTATGTTCAAATA
TAGGAATTCGGGAAAAACAAGGAACACAGAATCATTTAAAATATCATAAA
TTGGAAGTAGCTTAATATAAATATTTTTAAAATTATTTTGTATATATTAG
TGTCATGAAAATGTCCAAAAATTATCAATAATTTGGATGAGACATTTTTG
CTAAAGCAAACTAAATTATTAACGATCCCAATTTCTCATCAAAATTTTAC
CAATGTGTAAAGTAGTAAATAATTTCATTGTAACTTTTAAGATCTGTAAT
TCTGAATAAAAAAATAATGCAATTTCGGTATTCTCATGGCATAATTATGG
AATATGTTGAATCCTTAATCAAGTTGAGCAGCAACTAAAACTGAAACTAT
GTAACCCCAAGTGCCCCAAAATACAATAGTCTAAATATAGAGAATTCCAC
TCCATTTTAAATGTCAAAAGGTAGATGTGCTACAAATCAAATTGTTTAAA
ATAATTTTAGTGTATGTATACATTCATGTATTCATCATAATGAATTTTTC
ATTTAAACTTAGGCCATATATAAAATAACTCATTATTCATATGCAAACAT
CCCCAGACCTGAAACCTCACTTCTGAAATCTGAAGCCCTTTTGATCATAA
GTATTTTGCATAAGAGCTTCTCATCATATAGAGTAGTTTCATTACATTTC
TGTTTACAGTTATTATAACGCAGAGAGGTATAATGGCAGCACTGAGAGGA
AACAGGATGGCAGAACAACATTTAACCTTTCCTCATCACTTCTTTTACTC
CAATGCTACCATACTTTTAGATTTTATTACAGGCAAAATGAGGAATATAA
ACACTAAAACAGATAGCATGACATTCAAAACATTTAATGTTTTCTTTTAT
GTTACAAAACTCCTCCTATAAAAACCGGGAATTATTAGTTATATGGATTT
AACCCGGGAATATTTTAAAAATTTATGCTTTAAAAGGTTGGGAAAAAAAA
CAAGGGTTAAATTTTTCCAAAAATTCAAGTTCCTCTTCTTGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_p05.b1 MSMg01no062_p05.b1 CHROMAT_FILE:
MSMg01no062_p05.b1 PHD_FILE: MSMg01no062_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:05 2005
         (775 letters)



>mm_chr17_60300833_60302007
          Length = 1175

 Score = 1348 bits (697), Expect = 0.0
 Identities = 750/781 (96%), Gaps = 24/781 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttttatataccagtggtattattgccatatccctaatatatcagtgtcttattatgg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attttttatataccagtggtattattgccatatcactaatatatcagtgtcttattatgg 260

                                                                       
Query: 61  cttgatagaaaattttgaattcaaggttatcttagtttttcattttttaattgatcttgg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgataaaaaattttgaattcaaggttatcttagtttttcattttttaattgatcttgg 320

                                                                       
Query: 121 caaattgtgtatttttttcacaaaacattgagttgatttatagatttcttcaaagcagtc 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 caaattgtgtatttttttcacaaaacattcagttgatttatagatttcttcaaagcagtc 380

                                                                       
Query: 181 ttttagaactttttaaattatgcacaatctataaataaatttgagaatttctaactgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagaactttttaaattatgcacaatctataaataaatttgagaatttctaactgcaa 440

                                                                       
Query: 241 ctttaatctttcagc------tatatatatatatatatacatatatatagctgaaagata 294
           |||||||||||||||      |||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ctttaatctttcagctatatatatatatatatatatatatatatatatagctgaaagata 500

                                                                       
Query: 295 tatatttttatatatatataaatatatatacatatataaatatatatacatatataaata 354
           ||||  |||||||||||||||        ||||||||| ||||||||||        |||
Sbjct: 501 tata--tttatatatatataa--------acatatatacatatatatac--------ata 542

                                                                       
Query: 355 tatatacatatatatatttctataaaggtaggtagatattggtcttcataaatttcataa 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 543 tatatacatatatatatttctataaaggtaggtagatattggtcttcataaacttcataa 602

                                                                       
Query: 415 actttcttacaagataatatgttataaaatgttcttaaaatatttgtttgtaatttctta 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 actttcttacaagataatatgttataaaatgttcttaaaatatttgtttgtaatttctta 662

                                                                       
Query: 475 tgtcagcagtattataaatagttttaaatggagatacaatctctgtaataaaagttattc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgtcagcagtattataaatagttttaaatggagatacaatctctgtaataaaagttattc 722

                                                                       
Query: 535 aatatgtcaaaaatgtttacacaggttacatttttaagagatcccatgtgaatttccctg 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aatatgtcaaaaatgtttacacaggttacatttttaagagatcccatgtgaatttccctg 782

                                                                       
Query: 595 tagttgtcaagcactggcctcattaaccaaaccctttcctcatgttacccttggtttatt 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tagttgtcaagcactggcctcattaaccaaaccctttcctcatgttacccttggtttatt 842

                                                                       
Query: 655 ctttccatgtctctacatattttatgccctcttgtttcacaagctgccctttatcctcaa 714
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ctttccatgtctctacatattttatgccctcttgtttcacaagctgccctttatcctcaa 902

                                                                       
Query: 715 ctgagccctcctcctcttcccaccctgtcagattactcttccattttagaaaaatcttca 774
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 903 ctgagccctcctcctcttcccaccctgtcagattactctcccattttagaaaaatcttca 962

            
Query: 775 t 775
           |
Sbjct: 963 t 963



 Score = 70.3 bits (36), Expect = 6e-16
 Identities = 47/54 (87%), Gaps = 6/54 (11%)
 Strand = Plus / Minus

                                                                 
Query: 246 atctttcagctatatatatatatatatacatatatata------gctgaaagat 293
           |||||||||||||||||||||||||||| |||||||||      ||||||||||
Sbjct: 499 atctttcagctatatatatatatatatatatatatatatatatagctgaaagat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 775
Length of database: 1175
Length adjustment: 10
Effective length of query: 765
Effective length of database: 1165
Effective search space:   891225
Effective search space used:   891225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no062_p05.g1 MSMg01no062_p05.g1 CHROMAT_FILE:
MSMg01no062_p05.g1 PHD_FILE: MSMg01no062_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:05 2005
         (809 letters)



>mm_chr17_60384398_60385609
          Length = 1212

 Score = 1481 bits (766), Expect = 0.0
 Identities = 800/812 (98%), Gaps = 3/812 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtttcaaaattagaaagttttagaaaatatcttgaaagattcctgaggcattatgttcaa 60
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1174 gtttcaaaattagaaagttttagaaaatatgttgaaagattcctgaggaattatgttcaa 1115

                                                                        
Query: 61   atataggaattcgggaaaaacaaggaacacagaatcatttaaaatatcataaattggaag 120
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1114 atataggaattcgggaaaaacaaggcacacagaatcatttaaaatatcataaattggaag 1055

                                                                        
Query: 121  tagcttaatataaatatttttaaaattattttgtatatattagtgtcatgaaaatgtcca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 tagcttaatataaatatttttaaaattattttgtatatattagtgtcatgaaaatgtcca 995

                                                                        
Query: 181  aaaattatcaataatttggatgagacatttttgctaaagcaaactaaattattaacgatc 240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 994  aaaattatcaataatttggatgagacttttttgctaaagcaaactaaattattaacgatc 935

                                                                        
Query: 241  ccaatttctcatcaaaattttaccaatgtgtaaagtagtaaataatttcattgtaacttt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  ccaatttctcatcaaaattttaccaatgtgtaaagtagtaaataatttcattgtaacttt 875

                                                                        
Query: 301  taagatctgtaattctgaataaaaaaataatgcaatttcggtattctcatggcataatta 360
            |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||
Sbjct: 874  taagatctgtaattctgaataaaaaaataatgcaatttcggtattctcattgtttaatta 815

                                                                        
Query: 361  tggaatatgttgaatccttaatcaagttgagcagcaactaaaactgaaactatgtaaccc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  tggaatatgttgaatccttaatcaagttgagcagcaactaaaactgaaactatgtaaccc 755

                                                                        
Query: 421  caagtgccccaaaatac--aatagtctaaatatagagaattccactccattttaaatgtc 478
            |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 754  caagtgccccaaaatacaaaatagtctaaatatagagaatcccactccattttaaatgtc 695

                                                                        
Query: 479  aaaaggtagatgtgctacaaatcaaattgtttaaaataa-ttttagtgtatgtatacatt 537
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 694  aaaaggtagatgtgctacaaatcaaattgtttaaaataatttttagtgtatgtatacatt 635

                                                                        
Query: 538  catgtattcatcataatgaatttttcatttaaacttaggccatatataaaataactcatt 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  catgtattcatcataatgaatttttcatttaaacttaggccatatataaaataactcatt 575

                                                                        
Query: 598  attcatatgcaaacatccccagacctgaaacctcacttctgaaatctgaagcccttttga 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  attcatatgcaaacatccccagacctgaaacctcacttctgaaatctgaagcccttttga 515

                                                                        
Query: 658  tcataagtattttgcataagagcttctcatcatatagagtagtttcattacatttctgtt 717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514  tcataagtattttgcataagagcttctcatcatatagagtagtttcattacatttctgtt 455

                                                                        
Query: 718  tacagttattataacgcagagaggtataatggcagcactgagaggaaacaggatggcaga 777
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454  tacagttattataatgcagagaggtataatggcagcactgagaggaaacaggatggcaga 395

                                            
Query: 778  acaacatttaacctttcctcatcacttctttt 809
            ||||||||||||||||||||||||||||||||
Sbjct: 394  acaacatttaacctttcctcatcacttctttt 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 809
Length of database: 1212
Length adjustment: 10
Effective length of query: 799
Effective length of database: 1202
Effective search space:   960398
Effective search space used:   960398
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)