BAC Information

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BAC

Clone NameMSMg01-063C04
Chromosome17 (Build37)
Map Location 58,749,124 - 58,749,725
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC674419, LOC620408, EG545216
Downstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C04.T7 (MSMg01no063_c04.b1)MSMg01-063C04.TJ (MSMg01no063_c04.g1)
ACCAG288946AG288947
length6871,437
length of high quality
(start - end)		607 (44 - 650)---
definitionCHROMAT_FILE: MSMg01no063_c04.b1 PHD_FILE: MSMg01no063_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:22 2005CHROMAT_FILE: MSMg01no063_c04.g1 PHD_FILE: MSMg01no063_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCTGCTTCTCGAACTGAGAATATGCACCTCAACACCTGGTTGGTTT
TTCAAATATAGTATATATTATATGTATGTATTAATTATATTAATTTATGA
ATTAAAATATATTACATTTACTATTATATTTATATATTTAATAATATGTG
TGTTTTACACATAGATTAATGTGAAAAATCCAAAAACACTCTTAGCTTAT
GGGCTATTTTAAGAGCAGGAAAGTGGTTGGTCATACTTCTTTAGTTGATT
CTCTCTAGAAACAGGGATAGGCACACGTTGTTGTGGTTTACCTCCTCTAC
CGGGCTTCTAGGTAATTGCAGTTGCAGATAAGCAACAATGAAGCATAACC
AGCCATGAAATCTTATCTCAGCTTTATGATGATGCTCAGACATGTACGTC
CATTAAAATACAACATTTCTATGGACATTATGACATGAAGTCTATGCAAG
ATATACTTACAGTCTTACATGTCTAGACACTATAAATAGATGTAACAGTA
TTTTGAAGGAAATGCTAATAGAACAAAAAGGGATATGATATATCCCAAAG
ATGGTTTAAAACGTACTCTGTTAATTTTAAATTTTATAAATGTTAATGAG
ACAATTAGGACAACTGCTAAGATACATTGACTTTTAA

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGGGNNNNNNTTTTNNNCCNNNNNNCCCCCNNNTNNNNTTNNNNNCN
CCAAGCNNNNCNNNCCCGCTGATTAACTTGCGCGTNCCCAGCGGNNNGCG
GCNNNANCCGCCTTNNCCGTCCNNCTTGNTCGNCCGCCGNCGCNNGCGCC
GACCTGTCGNGGCGCGGCTTGCGCCGCGCTACGGCTTTGTCGGCCTTTCT
TCCACGCCTCGCGGGTGGTCGCCGCTGGTGCGCGGTCGCGTGCGATTAGC
CAGTCGCTCCCGGTGTTGAGTGCGAGTTCGGTCGATCGTCGCGCGCGCGT
CGTGCGATAGGGGAGGTGTGGGTGCGGAATTCGTCGCGTAAGCCGTGTTG
GAGTACGCCGAGCACCGCTCGTAGCATCGGTTCGGCATCGGGCATAATAC
ATGGGAATGCCGACGGTCACGGCCTACCGCGTGATTATCACGAGTTGGAC
ATACATGATAATAAGACTATATATAACTATACTAAAATAATTATATAAAT
ATTCAATTAATAATAAAATAACTATAATACAAATATATATATAATCGCGT
CGCACATTGGCATTTATTGTAAATATGGGTTGACTGCATTGTTGAGCATC
ATAATTACCATACAAATACNACCACGATAAATACATATATTAAGGTAATT
GAAGTAATAACATAAACGAAGTATGATGTAGTGTAGATGCGTATGGCGAT
AGTCAATATGACGCAGTCGATTGGAGTATCGTCTGCCGAGATGCGATTCG
TCTCTTAATGATGTTTATAATCGATGATGTTTATATCACTTCATATATGT
ACGTTTTAATCTATTCGCAGTTAANGCCGTGGACGTCTCGTATTATCCTG
ACCATCGTGATGTCCGATATTTGCAGGTTGTGACGTATCAGTGATGTACT
TGCTTATGATGATTTAGTATCTCTTCTGGTCACGTAGTGTAGAGAACCGA
CAATGTATCGATTAGGCAANGCGCGTATATCTGTATGCGTGTATGAGACG
ATCGACATTTATACTATACTCTATCTTCGTCAATCTACGAATGTATATCT
CTCGCGTAACTGATAGTAGATCTGATATCTAATTCTGCCGGATATGCGAG
TAAATGTGTTGACGTCTCGCGCAATGAGCAGTCATGATGCAATATAACAA
TCATATCAGCGCTATACGTCATGCTCGTCGTCACTCTATTTCGCGAATCG
CGTTGATCTGAGCAAAATTGATCGATCGTGTTCATCATGTCGTTGCGCAT
CTATATCTCTGGTGGNTATTGTATTTATGTATTTGATGACTGATGAGATT
TNGTGATACATAGTTAGATGACTGCTGTTATTCGCGCGTCGTCTATATTA
TTATATGAGTGATTGTATTGCTTAGTCGTGTTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c04.b1 MSMg01no063_c04.b1 CHROMAT_FILE:
MSMg01no063_c04.b1 PHD_FILE: MSMg01no063_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:22 2005
         (607 letters)



>mm_chr17_58748920_58749925
          Length = 1006

 Score =  982 bits (508), Expect = 0.0
 Identities = 580/604 (96%), Gaps = 3/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctgcttctcga-actgagaatatgcacctcaacacctggttggtttttcaaa 63
           |||||||||| ||||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcacctacttct-gacactgaaaatatgcacctcaacacctggttggtttttaaaa 263

                                                                       
Query: 64  tatagtatatattatatgtatgtattaattatattaatttatgaattaaaatatattaca 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatagcatatattatatgtatgtattaattatattaatttatgaattaaaatatattaca 323

                                                                       
Query: 124 tttactattatatttatatatttaataatatgtgtgttttacacatagattaatgtgaaa 183
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttactattatatttatatacttgataatatgtgtgttttacacatagattaatgtgaaa 383

                                                                       
Query: 184 aatccaaaaacactcttagcttatgggctattttaagagcaggaaagtggttggtcatac 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatccaaaaccactcttagcttatgggctattttaagagcaggaaagtggttggtcatac 443

                                                                       
Query: 244 ttctttagttgattctctctagaaacagggataggcacacgttgttgtggtttacctcct 303
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 444 ttctttagttgattctctctagaaataggcataggcacacgttgttgtggtttacctcct 503

                                                                       
Query: 304 ctaccgggcttctaggtaattgcagttgcagataagcaacaatgaagcataaccagccat 363
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct: 504 ctaccgggcttctaggtaattccaattgcagataagcaacaatgaagcataacca-ccat 562

                                                                       
Query: 364 gaaatcttatctcagctttatgatgatgctcagacatgtacgtccattaaaatacaacat 423
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 563 gaaatcttatctcagctttatgatgatgctcagacatatacgtccattaaaatacaacat 622

                                                                       
Query: 424 ttctatggacattatgacatgaagtctatgcaagatatacttacagtcttacatgtctag 483
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 ttctatggacattatgatatgaagtctattcaagatatacttacagtcttacatgtctag 682

                                                                       
Query: 484 acactataaatagatgtaacagtattttgaaggaaatgctaatagaacaaaaagggatat 543
           ||||| |||||||||||||| ||||||||||||||||||||||||||||  |||| ||||
Sbjct: 683 acactgtaaatagatgtaaccgtattttgaaggaaatgctaatagaacaggaaggcatat 742

                                                                       
Query: 544 gatatatcccaaagatggtttaaaacgtactctgttaattttaaattttataaatgttaa 603
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 743 gatatatcccaaagatggtttaaaatgtactatgttaattttaaattttataaatgttaa 802

               
Query: 604 tgag 607
           ||||
Sbjct: 803 tgag 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space:   594612
Effective search space used:   594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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