BAC Information

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BAC

Clone NameMSMg01-063F05
Chromosome17 (Build37)
Map Location 4,558,551 - 4,559,094
singlet/doubletsinglet
Overlap genenone
Upstream gene1700102H20Rik, Nox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063F05.T7 (MSMg01no063_f05.b1)MSMg01-063F05.TJ (MSMg01no063_f05.g1)
ACCAG289092AG289093
length692703
length of high quality
(start - end)
569 (31 - 599)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no063_f05.b1 PHD_FILE: MSMg01no063_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:38 2005CHROMAT_FILE: MSMg01no063_f05.g1 PHD_FILE: MSMg01no063_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATACGGAGAGATCCGCGGAATTCTCAGTGAG
CAAGGACATGCACTTGCTGAGTGGGAGGGAGGGCAGAGCCTACCATAGGG
AATTCTCACCCGAGGAAGGACATGCACTTGCTGAGTGGGAGGGAGGGCAG
AGTCTCCCATAGGGAATTCTCAGTGAGGAAGCCCGAGCACCTGGCCATTG
AGCCACCCATTTTCACAGGCCTTGTTTCTTGGTTACAGTTCCCTTTGCAA
GGCTACAATTGCTCATCAAAGAATTATGCATCAACATACAGCCTGTGTTT
CTTCTCTCATCTCCTACCCTTCCCTCTGCTTACTTCAGTCCCAGCCCGTG
CTGTTTGAATCCAATATTTCACATGAAGTTTGTGAATGGGTTACCAGGGT
GGACAAGATAGTAACTGAGGCTGCCAGACATGAACCTGAGTCACTTAAGT
GTCTCTAGCCACATCTGCCTGGGTACAGCCACATTCATTTGCTCCAGCAT
GTATGTGCATATGTCACTTTGTATGTGTGACACTAACCTTCAAGGGGGCT
GTGTCAGTCCCCAGCAAGTCTCTCCCTTTGGTTTCACTCTCCATTCTGGT
ACCTACTGGTACTTTCTCACTGAATCCTGCCCTTGAGGCGTCCTGATCTT
TCTAGACCCTTTAGNTTCAGATTAGAATGAACCACCTTGAAG
GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATAGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCTTGTGCATATATCCCCAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGAAACCTTATTTATAATAGCCAGAAG
CTGGGAAGAACCCAGATGCCCCTCAACAGAGCAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGCACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_f05.b1 MSMg01no063_f05.b1 CHROMAT_FILE:
MSMg01no063_f05.b1 PHD_FILE: MSMg01no063_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:38 2005
         (569 letters)



>mm_chr17_4558331_4559294
          Length = 964

 Score =  959 bits (496), Expect = 0.0
 Identities = 535/552 (96%), Gaps = 11/552 (1%)
 Strand = Plus / Minus

                                                                       
Query: 21  caaggacatgcacttgctgagtgggagggagggcagagcctaccatagggaattctca-- 78
           ||||||| |||||||||||||||||||||||||||||  || ||||||||||||||||  
Sbjct: 764 caaggacttgcacttgctgagtgggagggagggcagattctcccatagggaattctcagt 705

                                                                       
Query: 79  cccgaggaaggacatgcacttgctgagtgggagggagggcagagtctcccatagggaatt 138
              |||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 704 ---gaggaaggacatgcacttgctgagt----gggagggcagagtctcccatagggaatt 652

                                                                       
Query: 139 ctcagtgaggaagcccgagcacctggccattgagccacccattttcacaggccttgtttc 198
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 651 ctcagtgaggaagcccgagcacctggccattgagccacctattttcacaggccttgtttc 592

                                                                       
Query: 199 ttggttacagttccctttgcaaggctacaattgctc-atcaaagaattatgcatcaacat 257
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 591 ttggttacagttccctttgcaaggctacaattgctcta-caaagaattatgcatcaacat 533

                                                                       
Query: 258 acagcctgtgtttcttctctcatctcctacccttccctctgcttacttcagtcccagccc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acagcctgtgtttcttctctcatctcctacccttccctctgcttacttcagtcccagccc 473

                                                                       
Query: 318 gtgctgtttgaatccaatatttcacatgaagtttgtgaatgggttaccagggtggacaag 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtgctgtttgaatccaatatttcacatgaagtttgtgaatgggttaccagggtggacaag 413

                                                                       
Query: 378 atagtaactgaggctgccagacatgaacctgagtcacttaagtgtctctagccacatctg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atagtaactgaggctgccagacatgaacctgagtcacttaagtgtctctagccacatctg 353

                                                                       
Query: 438 cctgggtacagccacattcatttgctccagcatgtatgtgcatatgtcactttgtatgtg 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cctgggtacagccacattcatttgctccagcatgtatgtgcatatgtcactttgtatgtg 293

                                                                       
Query: 498 tgacactaaccttcaagggggctgtgtcagtccccagcaagtctctccctttggtttcac 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 tgacactaaccttcaagggggctgtgtcagtccccagcaagtctctccctttgttttcac 233

                       
Query: 558 tctccattctgg 569
           ||||||||||||
Sbjct: 232 tctccattctgg 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 964
Length adjustment: 10
Effective length of query: 559
Effective length of database: 954
Effective search space:   533286
Effective search space used:   533286
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)