BAC Information

Click to search

BAC

Clone NameMSMg01-063K08
Chromosome17 (Build37)
Map Location 47,585,266 - 47,585,572
singlet/doubletsinglet
Overlap geneAI661453
Upstream geneTtbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik
Downstream geneTbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063K08.T7 (MSMg01no063_k08.b1)MSMg01-063K08.TJ (MSMg01no063_k08.g1)
ACCAG289332AG289333
length687742
length of high quality
(start - end)
365 (48 - 412)269 (139 - 407)
definitionCHROMAT_FILE: MSMg01no063_k08.b1 PHD_FILE: MSMg01no063_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:05 2005CHROMAT_FILE: MSMg01no063_k08.g1 PHD_FILE: MSMg01no063_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTTCTAGCCATAGGATGCTAACTTCAGTTGATCATCACCTTG
GCCACAGGAGTCTTTACACAGTTGTGAGCATCTCTGGAAATGAATTGGGC
AGAAGTTTGTTTGTTTGTTTGTTTTTTGTTTTAACCTTCTAGTTGAAAGT
GACAATTCTGTGTCTATGACCTTGAACTTCTGATTTTCCTGCCTCCAATT
CTCAAGTGCTTCAATCACAGGCAGGCTCAGCCAGTCCTGTTTGGTTTTTG
TTTTTGGAATGCTGAATCCTGAGGTGCGAGCAAGCACTTTGCTGACTGAA
CTACAGCCTCAGCCTCAGAGGTCACTTTTAAACAGAAAATACATGACCTG
AAAGGCGTGGTTTTGAGACAGGGTCTCATGTAGCCAAGGATGACGGAATT
CCCTCTCTCAAAATGTTGGCTCTGTGGGACAGGATTTAACCCGGGTTTGT
TACTTGGGAAATGAACCCAGGGCATCTATTTCTTTCTAGTTTTTAATTTT
CCTTTGCTTATTACGCCCTTTGCTGACTCGGTCCCACCTATTCCTGGATT
ATAACGCCAGGCCTTCCTTGAACTCCAGTATTTACTACTTTCTACCTCCC
ATATGCTGCTAATGTCTTTAATAACCCTTTATTCCAC
NNNTTTTNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNCCCCCCCCC
CNCCCCCCTCTNNTNTTTCGATGATATGCGTAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAAAGGA
AGAGCTGACACTGTGGCTCGGTTGCTCGAGGGCCTAATGCCTAAAGCTGG
CCCTGTCGGCCCCACAGCAGCATGTAACCCAGAGGTGGTGGCCCACACCT
GTAATACCAGCCCTTGAGAGGCCAAAGCAAGAGGCGCACGCCTTTAATCC
CAGCACTCAGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAAAGTGAGTTCCAGGACAGCCGGGGCTACACAGAGAAACCCTG
TCTCATAACAAAAAAAAAAAATTTTGGATCCCAGATTCCAAAAAGTTTGT
CTTTTCATACTAGAGATTGAACCCAGGGCCTTGCTTACACCAGACAAAGG
TTCTGCCACTGAAGCCCATTTGTAGCCTTCTGTGGGACTCTAGTGGTCTG
CTAGGGTTGCCGAACCATCACTCCAGCCTCGATATCGTCCCAGGTTAGTT
TACACTTTATAAAGCCTGCTTTTCCAATCAGAAGCCAATTTGAACAATAA
CACTCCTGGGACACTGTCTTCCAGCAAAAGGAAGCTTTTCTCTCTCGTTA
GTTTTCTCATAATATCCTTTACTACATGTTTCATCCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_k08.b1 MSMg01no063_k08.b1 CHROMAT_FILE:
MSMg01no063_k08.b1 PHD_FILE: MSMg01no063_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:05 2005
         (365 letters)



>mm_chr17_47585266_47586030
          Length = 765

 Score =  503 bits (260), Expect = e-147
 Identities = 295/308 (95%), Gaps = 5/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacttctagccataggatgctaacttcagttgatcatcaccttggccacaggag 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggaattcacttctagatataggatgctaacttcagttgatcatcaccttggccacaggag 248

                                                                       
Query: 64  tctttacacagttgtgagcatctctggaaatgaattgggcagaagt---ttgtttgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 247 tctttacacagttgtgagcatctctggaaatgaattgggcagaagtttgttgtttgtttg 188

                                                                       
Query: 121 tttgttttttgttttaaccttctagttgaaagtgacaattctgtgtctatgaccttgaac 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 187 tttgttttttgttttaaccttctagttgaaagtgacaaatctgtgtctatgaccttgaac 128

                                                                       
Query: 181 ttctgat-tttcctgcctccaattctcaagtgcttcaatcacaggcaggctcagccagtc 239
           ||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 127 ttctgatcttt-ctgcctctaattctcaagtgcttcaatcacaggcgggctcagccagtc 69

                                                                       
Query: 240 ctgtttggtttttgtttttggaatgctgaatcctgaggtgcgagcaagcactttgctgac 299
           ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct: 68  ctgtttggtttttgtttttgggacgctgaatccagaggtgcgagcaagcactttgctgac 9

                   
Query: 300 tgaactac 307
           ||||||||
Sbjct: 8   tgaactac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)