BAC Information

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BAC

Clone NameMSMg01-063M03
Chromosome17 (Build37)
Map Location 55,866,132 - 55,866,528
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
Downstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063M03.T7 (MSMg01no063_m03.b1)MSMg01-063M03.TJ (MSMg01no063_m03.g1)
ACCAG289413AG289414
length657748
length of high quality
(start - end)
546 (28 - 573)397 (130 - 526)
definitionCHROMAT_FILE: MSMg01no063_m03.b1 PHD_FILE: MSMg01no063_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:15 2005CHROMAT_FILE: MSMg01no063_m03.g1 PHD_FILE: MSMg01no063_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTCACCTGAGCAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTAAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCATCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGACAAATGGATATTA
GCCCCAAACCTACGATACCCAAGATATAAGATACCATTTCCTAAACACTT
GAAACTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCTACTTT
CCCCCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTCAGAGAAGACAGTTAT
AACTGTATGCTTAGAGTTTCATAGCCAGCTTAGCTACCTGGATAAACTTA
TGACCAATAAGAGTCATTTTACAATTAGTACTATAATCACTGAGGTCTCA
ATATGGATATCTAATAAACAGGTATGCCCCCAGTATATAACTAATACAGA
CACAGAGGGCTGTAAGTACTCTGTTTTCTGGTTGATATGAACTATCTAAA
TCAATAAATGTGTAGAACAAGAACAGCATATGATAGTCTCTACAGACTTG
AAAGGCCAGAAAGAAGGTATGACTGTTTACCAGTTCTGGAGTTTCCTTAG
ATGTTGTGAAAATGGATGGAAATAAACATTATGAACTAACCATATTAAAT
TATTTAAATTCTTATCTTTGTCTGCATGTCTTGTATCATAATAACAAATA
ATGAACGATAAATGATTTCAACATGTAGCCTTAAGCTAAAACCAGAAGGC
CTATTTTCATTTTGAAAACATCGTATGTGCCATTGCTATAAATTTGTGGC
GAAACACTTCTTGCGTTTATAGAATGACCTTTAGTTCTTCATCCATGCTG
ATCATGCGAAAAATGATGCCAGGATAAGAAATCCCCCTGTGTACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_m03.g1 MSMg01no063_m03.g1 CHROMAT_FILE:
MSMg01no063_m03.g1 PHD_FILE: MSMg01no063_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:15 2005
         (397 letters)



>mm_chr17_55865932_55866728
          Length = 797

 Score =  721 bits (373), Expect = 0.0
 Identities = 391/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattcagagaagacagttataactgtatgcttagagtttcatagccagcttagctacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caattcagagaagacagttataactgtatgcttagagtttcatagccagcttagctacct 538

                                                                       
Query: 61  ggataaacttatgaccaataagagtcattttacaattagtactataatcactgaggtctc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 537 ggataaacttatgaccaataagagtcattttaaaattagtactataatcactgaggtctc 478

                                                                       
Query: 121 aatatggatatctaataaacaggtatgcccccagtatataactaatacagacacagaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aatatggatatctaataaacaggtatgcccccagtatataactaatacagacacagaggg 418

                                                                       
Query: 181 ctgtaagtactctgttttctggttgatatgaactatctaaatcaataaatgtgtagaaca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgcaagtactctgttttctggttgatatgaactatctaaatcaataaatgtgtagaaca 358

                                                                       
Query: 241 agaacagcatatgatagtctctacagacttgaaaggccagaaagaaggtatgactgttta 300
           ||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||
Sbjct: 357 agaacagcatatgatagtctctacaggtttgaaaggctagaaagaaggtatgactgttta 298

                                                                       
Query: 301 ccagttctggagtttccttagatgttgtgaaaatggatggaaataaacattatgaactaa 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcagttctggagtttccttagatgttgtgaaaatggatggaaataaacattatgaactaa 238

                                                
Query: 361 ccatattaaattatttaaattcttatctttgtctgca 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ccatattaaattatttaaattcttatctttgtctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)