BAC Information

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BAC

Clone NameMSMg01-063M05
Chromosome17 (Build37)
Map Location 15,506,610 - 15,506,898
singlet/doubletsinglet
Overlap geneDll1
Upstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953
Downstream geneLOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063M05.T7 (MSMg01no063_m05.b1)MSMg01-063M05.TJ (MSMg01no063_m05.g1)
ACCAG289417AG289418
length668680
length of high quality
(start - end)
567 (31 - 597)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no063_m05.b1 PHD_FILE: MSMg01no063_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:15 2005CHROMAT_FILE: MSMg01no063_m05.g1 PHD_FILE: MSMg01no063_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATACGGAGAGATCCGCGGAATTACTATGTAC
ACCAGGCTGGGCTCAAACTCACAGAGATCCACCTGCCTCTGCCTCTTGAG
TGTTGAGATTAAAGGCATGTGCTGCCATTCCCAGCAAGACTAGATTTAAA
TTTAAAAGAGACCTTGTACTTTTTAAAGAGTTATTTATTTTTAATGTATA
CGAGTACACTGTCACTGACTCACCAGAAGAGGGCATCAGATCCCATTATG
GATAGCTGTGAGCCACCGTGTGGTTGCTGGGAATTGAACTCAGGACCTCT
GGAAGAGCAGTCAGTGCTCTCAACTACTGAGCGATCTCTCAAGCTTGAGA
CTTTGTACTGTTTTTGTTTTTGTTTTTGTTTGTTTGTTTGTTTTTCGAGA
CAGGGTTTCTCTGTGTATCCCTGGTTGTCCTGGAGCTCACTTTGTAGACC
AGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTG
GGATTAAAGGTGTGCGCCACCACGTCCAGCCTGAGACTTTTAAAGCATTG
GAATTTTAAACTTTAGTTTTACTTGTAAGAGGGAGGCGGGGGAGGTGTGT
GCACATGAGTCCAGGTGCCCTTGGAGACCGGAAGCATCAGCTTCCCTGGA
TCTGGAGTTCCATCTGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGAGAATGTCATGCTCACTGGCTGTTG
GTGAAAAGTCAGAACTGAAAACCACCGGAAAAGAGGGAAGACCGACCAGA
ATACAGAAGGCGAGAGAAGAAGGAGGGGGGAAAGGAGGGAAAGACGGGAA
AGCATCTATTGGCTCAGCCTCCCTTCTAAGTCTGTTTTAGGTACCTCTCT
CTCACTAGCAAGAAGCTCCTGGTATACAAAGCGTGCCTCTTCATACGTGG
TACCCAAATTATCACCTGGAGCTAGACTTCCTTCCCAAAACACCGTGGCT
GTGCTTCCTGTGTTTAAGCACAGCTTGCAGAGCCATGGATAGGAGTGACA
TGCGCCAAAACACTACTGGCCCCGAGCAAGCTGTGGGCTGCTGACCAGGT
CATTCCTTGCATTATGAGTATGACACCAACCCCCCCCCTTTTTGTCTTCC
TTCCTCCTGAATCCTCACGGAATTGACTTGGGGATCCACAAACTCAAGGT
GACTCACAGAGCAATGTGTTCCCTAATAAGTGCACCTGCTTTTGGAGCCA
GTCCTCCAGGCATTTCCCCATTGCCCCTCACCGTTAGAACAGGGGAAGAG
CCGCAGAGACCCATCTTCTTCTCACAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_m05.g1 MSMg01no063_m05.g1 CHROMAT_FILE:
MSMg01no063_m05.g1 PHD_FILE: MSMg01no063_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:15 2005
         (289 letters)



>mm_chr17_15506410_15507098
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagaatgtcatgctcactggctgttggtgaaaagtcagaactgaaaaccaccggaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagaatgtcatgctcactggctgttggtgaaaagtcagaactgaaaaccaccggaaaa 260

                                                                       
Query: 61  gagggaagaccgaccagaatacagaaggcgagagaagaaggaggggggaaaggagggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggaagaccgaccagaatacagaaggcgagagaagaaggaggggggaaaggagggaaa 320

                                                                       
Query: 121 gacgggaaagcatctattggctcagcctcccttctaagtctgttttaggtacctctctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgggaaagcatctattggctcagcctcccttctaagtctgttttaggtacctctctct 380

                                                                       
Query: 181 cactagcaagaagctcctggtatacaaagcgtgcctcttcatacgtggtacccaaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactagcaagaagctcctggtatacaaagcgtgcctcttcatacgtggtacccaaattat 440

                                                            
Query: 241 cacctggagctagacttccttcccaaaacaccgtggctgtgcttcctgt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacctggagctagacttccttcccaaaacaccgtggctgtgcttcctgt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)