BAC Information

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BAC

Clone NameMSMg01-064N12
Chromosome17 (Build37)
Map Location 17,635,466 - 17,635,772
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1
Downstream geneLOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N12.T7 (MSMg01no064_n12.b1)MSMg01-064N12.TJ (MSMg01no064_n12.g1)
ACCAG290200AG290201
length737721
length of high quality
(start - end)
314 (46 - 359)---
definitionCHROMAT_FILE: MSMg01no064_n12.b1 PHD_FILE: MSMg01no064_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:06 2005CHROMAT_FILE: MSMg01no064_n12.g1 PHD_FILE: MSMg01no064_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCATAACAATTATATCTAAATCAATAGGTATTGGTATCTTTT
GGACCATAGGTCCATTTGAGACTTTCTGGAGAAATACAGAGATAGACCTA
TAAACATTTTGTTGCATTTTAAGGGTTTTCCAGGATCTGTGTTTATAGGC
TCATACTGTAACCACTTAGATTGATATATTTTTTAATGTTGTGTTTTATT
TTAGTGAGGAATAAAATTCAAAAGATTCATGTGGAATAAGATTCATGTGG
AATTAACATTAGAAATGGCCTTAGGTTTCTATTGCTGTAATAAAGACCAA
GACCAATTTTTTGTTGCACAACACCGGGTTATTTTATCTGGTGGCTCTCA
GTGAAGGAAGTCCCGCCAAAAACTCAAAGCAGGAACCTGGAGGCAGGAAC
TGAAGCAAAAACCACGAATGAGTGTTGCTTACTGCCTTGCTCTCCTATAC
TTGCTCAGCCTGCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTT
CTTTCTTTTTCTTTTTTTTTTCATCCCACCTGCTTTCAGGTGATTTCTTT
TTTTTTTTTTTCCGTAATCACATACCCTTTTCCCACAGGGTCAGAGTTGG
ATTGCTTCCGTGAGGCCCCCATTACAACTCGAGTCCC
NNAATACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGAACAAAA
ATGACCACATCACCATGATTGATTTTCCGCAAAGGGTTTCCACATCCCAC
CCAAAGGCTGAAGGGAATATGCTAAAACTGACTGAAGTTGTGAATGAATT
TGAAAATCACAAAACCTCTTTTAATTAATAATTTTCCAGTTTTCAATTTG
ATCAGAAAATGATTTCAATTAAGGACATTTGTTTTTCAATTAAGGAATAT
GGAACTACTAAAATTTTCCCTGTAATAAAATCTTTAAAGAAAAACTTTTA
AAAAAAAAAATTTTCCTAAATTCCCCCCCCCCCCCCTAATTATTATGTTA
ATCTGGGGATTGGGAAATCCCCCCGAAAAAAAAAAAAAAACCTATCTTAT
ACTTAACTTGCAAGGAAAATATCATTAAAAAAAAGTTGGATTTAATACTC
AAATCAAGCTTTCTTAGCCAGGGAGCCATTTATTCAAGCAAAACTTCAAG
AAGGAGCCTGGTTTTTAAAGACAAAGTTTGTTCTTATGTGAAAAAAGCCT
GCGCCCTGCCTATAACCAATTAACTGACCTCCCTCCACTACACACTTTTA
CCTGACTGTCCCCTTTTACCGCCATTTGACCCATACGTTACATGCTTTCC
AAAGTTCCTCCTGATACTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n12.b1 MSMg01no064_n12.b1 CHROMAT_FILE:
MSMg01no064_n12.b1 PHD_FILE: MSMg01no064_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:06 2005
         (314 letters)



>mm_chr17_17635262_17635975
          Length = 714

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttccataacaattatatctaaatcaataggtattggtatcttttggaccatag 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattctttccataacaattatatctaaatcaataggtattggtatcttttggaccatag 452

                                                                       
Query: 65  gtccatttgagactttctggagaaatacagagatagacctataaacattttgttgcattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtccatttgagactttctggagaaatacagagatagacctataaacattttgttgcattt 392

                                                                       
Query: 125 taagggttttccaggatctgtgtttataggctcatactgtaaccacttagattgatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taagggttttccaggatctgtgtttataggctcatactgtaaccacttagattgatatat 332

                                                                       
Query: 185 tttttaatgttgtgttttattttagtgaggaataaaattcaaaagattcatgtggaataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttttaatgttgtgttttattttagtgaggaataaaattcaaaagattcatgtggaataa 272

                                                                       
Query: 245 gattcatgtggaattaacattagaaatggccttaggtttctattgctgtaataaagacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gattcatgtggaattaacattagaaatggccttaggtttctattgctgtaataaagacca 212

                  
Query: 305 agaccaa 311
           |||||||
Sbjct: 211 agaccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)