BAC Information

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BAC

Clone NameMSMg01-065F13
Chromosome17 (Build37)
Map Location 24,169,484 - 24,304,241
singlet/doubletdoublet
Overlap genePrss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c
Upstream geneLOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225
Downstream geneTbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065F13.T7 (MSMg01no065_f13.b1)MSMg01-065F13.TJ (MSMg01no065_f13.g1)
ACCAG290579AG290580
length693660
length of high quality
(start - end)		449 (33 - 481)490 (56 - 545)
definitionCHROMAT_FILE: MSMg01no065_f13.b1 PHD_FILE: MSMg01no065_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:49 2005CHROMAT_FILE: MSMg01no065_f13.g1 PHD_FILE: MSMg01no065_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,169,484 - 24,169,924)(24,303,752 - 24,304,241)
sequence
GCGGCCGCTATACGACTCCTATTGCAAGAGGATCCGCGGAATTCTTGTCA
TGCGCTCTTGAAAAGGAGTCACATGACTCCAGAACCTCTAGGTATGGCCA
GACACAGTAAGCCTTTCTTCTTGGGTGCTATTGCTGCCACTGTTCTGACA
CTAAAATTATTTGGTCAGGTATGGTGATAAACAATTGCAATCCCAGTAGT
CGGGAAGCTGAGGCAGGGGGTTGACACAAATTTGAGACCATTCTAGGATA
CATAATGAGTATCAAATTAGGACTACATGTTAAGCCATTGCTAGCCAAGC
CGTGGTGGCCCATGCCTACAGTCCTAGCACTCAGTAGGTAAGGCAGGCCA
ATCTCTATTAGTCTATCCTGGTCTACAGAGTGAGTTCTTCAACATCCAGG
GCTACATACAAAAACCCTGTCTCGAGGGAAAAGAAGGAGGAAGAGGTGGG
GGAAGAAAAGAAGGAGGGGGAGGAGGAGGTTTCTCTTTTTTTTATCTACT
TCTTTTTTGTATACTTAATATTTATCTCTTAACATATATATTATTTCCCT
TTTTTTATTCTTTAATATATTCTTCGCAAGTCTACTTATTTATTTTTTTT
TTCTCTATTTTCCTATTTCCCCTAACTTTTACATGTTTTTGCTCTATCCG
TTCTCCTCTCTTTACGGGCATTTGTATACTACCAGAACCTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAAGCTTCGTCTCAGTGACTGACCCTTGGTCTCCCTTGGACTTAA
CTAACCAAGTTTTCAGACCATTGTTCTTTAACGCATCCTTGAGGCCTCCG
TTTCATGCTAACAATCTAACTTCCCTTTTTTTCCCTTATGACAAATATCC
TGTTCTTTCCTCATCATGTTCTCCATGAAACTGCCAGTTACTTCTTTTCT
GTATTTTCTGTGACTTCCTCCCTGTATTTGTTGATTTCCTGGAAGTGCCT
CCAGACCATGCTGTATTAAATTAGCATTCTCAGCAGGTCTCCCTTCTGCA
GCCTATCATGCTTGCTCTTCTGGGTAGCTGCTACTGTCTGGGCCTGCCCT
AAATTTTTTTCCTCCTTTTGCCCTGATCTCCGACAGTGTCCCTGTTTTCC
ATCCTCTATCTTCTTGTCACCCATCCTCAGCTCCATGATCTATACTTTGG
GGAAGGACCTGACTCACTCACCTTTCTTGGAGTATCACCTTTTGGGGTAC
AGAGTTGTGTTGAGATCTCACCTTTAAAGTACTGCACGGCAACCTGTATT
CTTGGTGTGTTCAAGCATGCCTCATATATGCTGACCCTTGGAACACACAC
TTTTTGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_f13.b1 MSMg01no065_f13.b1 CHROMAT_FILE:
MSMg01no065_f13.b1 PHD_FILE: MSMg01no065_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:49 2005
         (449 letters)



>mm_chr17_24169278_24170126
          Length = 849

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttgtcatgcgctcttgaaaaggagtcacatgactccagaacctctaggtatggc 66
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttgtcatgtgctcttgaaaaggagtcacatgactccagaacctctaggtatggc 266

                                                                       
Query: 67  cagacacagtaagcctttcttcttgggtgctattgctgccactgttctgacactaaaatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagacacagtaagcctttcttcttgggtgctattgctgccactgttctgacactaaaatt 326

                                                                       
Query: 127 atttggtcaggtatggtgataaacaattgcaatcccagtagtcgggaagctgaggcaggg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atttggtcaggtatggtgataaacaattgcaatcccagtagtcgggaagctgaggcaggg 386

                                                                       
Query: 187 ggttgacacaaatttgagaccattctaggatacataatgagtatcaaattaggactacat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggttgacacaaatttgagaccattctaggatacataatgagtatcaaattaggactacat 446

                                                                       
Query: 247 gttaagccattgctagccaagccgtggtggcccatgcctacagtcctagcactcagtagg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttaagccattgctagccaagccgtggtggcccatgcctacagtcctagcactcagtagg 506

                                                                       
Query: 307 taaggcaggccaatctctattagtctatcctggtctacagagtgagttcttcaacatcca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taaggcaggccaatctctattagtctatcctggtctacagagtgagttcttcaacatcca 566

                                                                       
Query: 367 gggctacatacaaaaaccctgtctcgagggaaaagaaggaggaagaggtgggggaagaaa 426
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gggctacatagaaaaaccctgtctcgagggaaaagaaggaggaagaggtgggggaagaaa 626

                                
Query: 427 agaaggagggggaggaggagg 447
           |||||||||||||||||||||
Sbjct: 627 agaaggagggggaggaggagg 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no065_f13.g1 MSMg01no065_f13.g1 CHROMAT_FILE:
MSMg01no065_f13.g1 PHD_FILE: MSMg01no065_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:49 2005
         (490 letters)



>mm_chr17_24303552_24304441
          Length = 890

 Score =  932 bits (482), Expect = 0.0
 Identities = 488/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagcttcgtctcagtgactgacccttggtctcccttggacttaactaaccaagttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 caagcttcgtctcagtgactgacccttggtctcccttggacttaactaaccaagttttca 631

                                                                       
Query: 61  gaccattgttctttaacgcatccttgaggcctccgtttcatgctaacaatctaacttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaccattgttctttaacgcatccttgaggcctccgtttcatgctaacaatctaacttccc 571

                                                                       
Query: 121 tttttttcccttatgacaaatatcctgttctttcctcatcatgttctccatgaaactgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttttttcccttatgacaaatatcctgttctttcctcatcatgttctccatgaaactgcc 511

                                                                       
Query: 181 agttacttcttttctgtattttctgtgacttcctccctgtatttgttgatttcctggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agttacttcttttctgtattttctgtgacttcctccctgtatttgttgatttcctggaag 451

                                                                       
Query: 241 tgcctccagaccatgctgtattaaattagcattctcagcaggtctcccttctgcagccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgcctccagaccatgctgtattaaattagcattctcagcaggtctcccttctgcagccta 391

                                                                       
Query: 301 tcatgcttgctcttctgggtagctgctactgtctgggcctgccctaaatttttttcctcc 360
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 390 tcatgcttgctcttctgggtagctgctactgtctgggcctgggctaaatttttttcctcc 331

                                                                       
Query: 361 ttttgccctgatctccgacagtgtccctgttttccatcctctatcttcttgtcacccatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttttgccctgatctccgacagtgtccctgttttccatcctctatcttcttgtcacccatc 271

                                                                       
Query: 421 ctcagctccatgatctatactttggggaaggacctgactcactcacctttcttggagtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctcagctccatgatctatactttggggaaggacctgactcactcacctttcttggagtat 211

                     
Query: 481 caccttttgg 490
           ||||||||||
Sbjct: 210 caccttttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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