XXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATCCGCGGAATTCATAA
ACTATTCCCCTAAAGATTACATTTAGCCAGCAGCATGCCATTACATCTCT
CTCTCTCTCTCTTTCTCTCTCTCTGTCTCTCTCTTATTATATTGTTGTTT
AATCACATGTTTTTAGCCTTTTAGCCATGTTGATGATCTTTATTATAAAA
AGAAATCGTGTACAAAAAAAAAGTAGAATGATGCAAAATGTGATGGATGG
AAAATTGAGGAAAGTCTAATGCACATCATCTCAGGGATTATATCTGAGTT
TATGCATGGAGATATGGCTCAGGAGTTAAGAGTCATTGCTGCTTGGGTTA
AGAATGTCTGTGATATGAGGGACAAATACAACGAACATGGCTAATGAGGT
GCAACTCCATTGTTACATGGTGTAAAATGTAAGTAACTCAGATGAGTGGT
TATGAGAGATCTTGTCTTCATCTCGCACTTTGTATCATCAGACTCACTAC
GGATTCTCATTGTCTCTTCCTAGAAGCCTGATTGAAGCCCACCCATTGTG
TCAAATTAAAAGACAAATAAAGGATGAGAGATATTATATTCATTTAGATT
GGTGTTTAATATTTAAGAATCAACTCTACAATCCTTCCTGACTCTGTACT
ACTGTGGTTTGACGATACATGTCAAACTGTCCGAGAATTAATCTAGTCAA
TCAGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCAGTTGAGGTTCCCTCTTCCTTTGTTAACAAT
TAAAAATTAAATTGAAAAGTAATAAGCATAAGTGTGCAAATATCTTTGTA
GAAGGATATAAAATCCTTTGGCATGAGCCCAGGAATGGTATAGATGGGTC
ATATGATAGTTACATTCCAATTTCTTTTCAGGATAATTTTAATTGATTTC
AATGTAGATACAGTAATTTCCCTCCCACCAGCAATGTGTAAGAGCAGAAG
CAATAATATTGATGTAATAATAATGTATATATAAAAAAAGTCACAAAGAA
AAGGCTCAGAGTCTAATGGATTCACTGCCAAGTTCTTAAAGAACTTGAAA
GAACTGAGAGTAGTACTATTTAAATTATTCCATAAAACAGAGAGAGAAAG
TCTTCAGAAGTGGTTTTACAAAACCTGTATTAAACTGAAAACAAAACCAC
TTAAAGACAGCAACTACTAGAAAAGATAATGGACCTAAGGAGAATCTATT
ACTATTTTTTTTTTAATCAACTTAGCTTCGCATCAAACTGCCTCCTAAAT
AATTACCTTTATAAGCTCAGATTAGACTACCTCTCAATCCACATAAGAAA
CATTTTCTTTGGACAGCGGATGGGGGTTACTACAGAGATTCACATTTTGC
CAAGCCCCTCAG

Query= MSMg01no065_f18.b1 MSMg01no065_f18.b1 CHROMAT_FILE:
MSMg01no065_f18.b1 PHD_FILE: MSMg01no065_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:50 2005
         (520 letters)



>mm_chr17_59941706_59942624
          Length = 919

 Score =  864 bits (447), Expect = 0.0
 Identities = 504/531 (94%), Gaps = 18/531 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaacta--ttcccctaaag-attacatttagccagcagcatgccattaca-- 59
           ||||||||||||||  |  |||||||| ||||||||||||||||||||||||||||||  
Sbjct: 826 gaattcataaactaagt--ccctaaagtattacatttagccagcagcatgccattacatc 769

                                                                       
Query: 60  tctctctctctctctctttc----------tctctctctgtctctctcttattatattgt 109
           ||||||||||||||||||||          |||||||||||||||||| |||||||||||
Sbjct: 768 tctctctctctctctctttctctctctctttctctctctgtctctctcatattatattgt 709

                                                                       
Query: 110 tgtttaatcacatgtttttagccttttagccatgttgatgatctttattataaaaagaaa 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtttaatcacatgtttttagccttttagccatgttgatgatctttattataaaaagaaa 649

                                                                       
Query: 170 tcgtgtacaaaaaaaaagtagaatgatgcaaaatgtgatggatggaaaattgaggaaagt 229
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 648 tcgtgtac-aaaaaaaagtagaatgatgcaaaatgtgatggatggaaaattgtggaaagt 590

                                                                       
Query: 230 ctaatgcacatcatctcagggattatatctgagtttatgcatggagatatggctcaggag 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctaatgcacatcatctcagggattatatctgagtttatgcatggagatatggctcaggag 530

                                                                       
Query: 290 ttaagagtcattgctgcttgggttaagaatgtctgtgatatgagggacaaatacaacgaa 349
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 529 ttaagagtcactgctgcttgggttaagaatgtctgtgatatgagggactaatataacgaa 470

                                                                       
Query: 350 catggctaatgaggtgcaactccattgttacatggtgtaaaatgtaagtaactcagatga 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 catggctaatgaggtgcaactccattgttacatggtgtaaaatgtaagtaactcagatga 410

                                                                       
Query: 410 gtggttatgagagatcttgtcttcatctcgcactttgtatcatcagactcactacggatt 469
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 409 gtggttatgagagatcttgccttcatctcgcactttgtagcatcagactcactacggatt 350

                                                              
Query: 470 ctcattgtctcttcctagaagcctgattgaagcccacccattgtgtcaaat 520
           |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 349 ctcattgtctcttcctagaagccttattgaagcccatccattgtgtcaaat 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space:   463590
Effective search space used:   463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)