BAC Information

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BAC

Clone NameMSMg01-065F22
Chromosome17 (Build37)
Map Location 71,370,218 - 71,370,543
singlet/doubletsinglet
Overlap geneMyom1
Upstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik
Downstream geneLpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065F22.T7 (MSMg01no065_f22.b1)MSMg01-065F22.TJ (MSMg01no065_f22.g1)
ACCAG290597AG290598
length691688
length of high quality
(start - end)
328 (68 - 395)432 (71 - 502)
definitionCHROMAT_FILE: MSMg01no065_f22.b1 PHD_FILE: MSMg01no065_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:51 2005CHROMAT_FILE: MSMg01no065_f22.g1 PHD_FILE: MSMg01no065_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAAGAAATCCGCGGAATT
CAGGCCTTTCCGCTTAGCAGGAAGTGCCTTTGCTTACGGAGTCCTTGCAT
TTACTTCATGTGTAAATCATGTGTTCACCGAAAGACTACCAGCCACATGG
CAAACTAGAGCAAGTCATAATTTTATAGACACCTCTCCTAGGTTTTAAAA
AAAAAAAACTCCCATGTATAATATTATTATTTTCAAAACTATATAACAAA
ATTGTTTTCAAGCAAAGGTTTTTCTTTTCCTAACCTTGTTTTGCTTAAAA
TTCCTAAGTGAGGAGTGAATCCTTTTACATTTTTGTCATATTTAAAACTA
AGTTTTATTTAAGCTGTTTAAAAAGTCAGTGTGCTCTCTCTAGAGAAGAA
AAGCCAACAAACTTCACTCCTGAAATATGTATCTGAAGTCTCATGGGAAA
TACCAGTCTACATGACATTTTCTAAGAGAGAGAGAAAAAAAATAGCTACC
AGCAAGCAATTGTGCTTCCTTAAATCCTTAAATAGATTGCCTTTTCTGTT
ACTAAATATGCAGAACTATACTTAAAGGATAACTTTTGGGTGGCGTTTAT
AGTATAAAAGGGTTAGAATACACTGTATTATCGTCATGAAGTGTTAGGAA
AGTCTTCCGTATTGATGTCTTCAAAGCGACTTAAAAATAAA
ATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTATGTTTGTAAACTTGTACTTCCATTGT
GATACATGACTTTAATCTCAGCCCTTCAAAGGCAGAGGCAGGTAGACCTT
AATGAGTTCAAGGAAGCTGGGGTCTATGTAACGAGTTCTAGGACATTTGG
TCTTAGCTACACACACACACACATACACAGAGTCACACATATACTCAAAC
TCACACACTCACACACACAACTCTCACATAAACATGCACACACATGCAGA
CTGTCACACAAAGTTACACACTCTCACACATATGCACACTCACAGTCACA
CAACTCATACATCCACACATTCACACTCATATTCTCTCTCACATCCACAC
ACACACTCACACACACTTACATACACGCACATACTCATACATTCACTCAC
ATATACATACAGTCACACACACTCTCATATACTCACTCATACACACACTC
ATACACTCATTCACACACTCACACACACACACTTCCTCTTATGTTGAGAC
CAGTGGCGATGACCCCTGAGGAGTCTTATTGATCACCTAACTGAAGGATT
CATTGACCGTGACACACGAGATTGTCATCTCTATTGCACCGTGGTTCTGT
GTCTTATGTACTGACCGCTGTATACAACTCATGATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_f22.b1 MSMg01no065_f22.b1 CHROMAT_FILE:
MSMg01no065_f22.b1 PHD_FILE: MSMg01no065_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:51 2005
         (328 letters)



>mm_chr17_71370018_71370743
          Length = 726

 Score =  538 bits (278), Expect = e-157
 Identities = 315/330 (95%), Gaps = 6/330 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaagtgcctttgcttacggagtccttgcatttacttcatgtgtaaatcatgtgttca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 526 caggaagtgcctttgcttacggaggccttgcatttacttcatgtgtaaatcatgtgttca 467

                                                                       
Query: 61  ccgaaagactaccagccacatggcaaactagagcaagtcataattttatagacacctctc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 466 ccgaaagactaccagccacatggcaaactggagcaagtcataattttatagacacctctc 407

                                                                       
Query: 121 ctagg--ttttaaaaaaaaaaaactcccatgtataatattattattttcaaaactatata 178
           |||||  ||||    ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctaggtttttt----aaaaaaacctcccatgtataatattattattttcaaaactatata 351

                                                                       
Query: 179 acaaaattgttttcaagcaaaggtttttcttttcctaaccttgttttgcttaaaattcct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acaaaattgttttcaagcaaaggtttttcttttcctaaccttgttttgcttaaaattcct 291

                                                                       
Query: 239 aagtgaggagtgaatccttttacatttttgtcatatttaaaactaagttttatttaagct 298
           || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 aactgaggagtaaatccttttaaatttttgtcatatttaaaactaagttttatttaagct 231

                                         
Query: 299 gtttaaaaagtcagtgtgctctctctagag 328
           | |||||||||||||||| ||||| |||||
Sbjct: 230 gcttaaaaagtcagtgtgttctctttagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 726
Length adjustment: 9
Effective length of query: 319
Effective length of database: 717
Effective search space:   228723
Effective search space used:   228723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)