BAC Information

Click to search

BAC

Clone NameMSMg01-065G13
Chromosome17 (Build37)
Map Location 29,161,498 - 29,161,832
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38
Downstream geneSfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065G13.T7 (MSMg01no065_g13.b1)MSMg01-065G13.TJ (MSMg01no065_g13.g1)
ACCAG290626AG290627
length695687
length of high quality
(start - end)
248 (74 - 321)333 (71 - 403)
definitionCHROMAT_FILE: MSMg01no065_g13.b1 PHD_FILE: MSMg01no065_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:54 2005CHROMAT_FILE: MSMg01no065_g13.g1 PHD_FILE: MSMg01no065_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXNCACTTTCGGAGCGAGATCCGCGG
AATTCCATATTAACAACAAAATGGCCTCGAACTTATAGAGATTCTCCCAA
GTGCTAGAACTAAAGGTAGACTTTACCATGCCGACGAATTAAAAAAAAAA
AAAGAGTATATATGTCGTCTGTGCATATGTACATGTAATTGCATGTGGTA
AATACCCTCGGAGCTGGGGTTACAGGTTGTGAATTGTCCTATGTGGGTGC
TTGCAATAAAGATAAATAAATAAATAAATATTTTTTTAAAAAATGTCATG
AGCTGGCAAGATGGCTCATTTATTTCTTTTAAGACCCACATTCTGTCCCT
AGAACCCACCTCAGATAACTGTCTATAACTCCGGCTCCAAGAGGATCTGA
GGCTCTATCCTGCCTCCACAGGCACCCACACATGGCTGACACACACACAT
ACACACACATACACACACACATGCACAACAGATACATACATATACACAGG
GCAGATGAATACACTAAAACACATGGTTAGTACACACACACATATATGTG
GCAGATAAACTTACCTATACACACTGAAGGTGTACTCACACACTGCATAC
ACATATACACACAGAATCATATACTCTTACATACTCTGGTCAGATTCCTA
CTCTAATCTTACTTTGTTATCACTTTCATATACCTGTTATATATC
TGAACGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGAGGGGTGTGTTGGATCTCACCCTTCT
GGCTCCTGCCTTGCACCTGTATGTGCGGAGGCGGGGGTGGAGCAGGGTGG
GGGAATACGACGTGTGTGTCCCAGCATCCAGCAGAAAGGACAACATCAGC
CTTGCCTAAGAATGCTTTGCACTCAACTCCAGCCAGGTTGCTGAGATGCT
CAACATCTGGCCAGTCAGCAGCTCTCAGGCGGTTAGAAGACAGTAAGCTC
CTATCTCGATTTTTGTTTGGTGCCTTGTGACGAAGACCCACAACGCCGCG
ACTTCCTCGCCCTTTTCATCCCACATTGAAAGAGGAAGGAAGGAGTGAGG
CGGCTTAAGCGACGATTAAAACAGAGTTTTGAAAACTCCTACTTAAAGGG
AAACATTTAGCCTGAAGTCCAGGGGGCGTGACTCTTGGGTAACAGCAGCC
TCTGCGGATGGGACAGGGTGCTGTTGGGTCGTGCCAAGCCATCCCTATGC
CCCCTAAAACTGGTGTTGGTGTGTAGTTTCTTTTTTTTTTTTTCTTCCCG
CGCTCTCTCCTCATTACGGTCCACTAACCCTTTATTTAATCTCTTCATTT
CCTTCCCCCTCTTTTCTGTTTTATTTTTCTTTCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_g13.g1 MSMg01no065_g13.g1 CHROMAT_FILE:
MSMg01no065_g13.g1 PHD_FILE: MSMg01no065_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:54 2005
         (333 letters)



>mm_chr17_29161298_29162032
          Length = 735

 Score =  605 bits (313), Expect = e-177
 Identities = 329/335 (98%), Gaps = 2/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaggggtgtgttggatctcacccttctggctcctgccttgcacctgtatgtgcggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaggaggggtgtgttggatctcacccttctggctcctgccttgcacctgtatgtgcggag 476

                                                                       
Query: 61  gcgggggtggagcagggtgggggaatacgac--gtgtgtgtcccagcatccagcagaaag 118
           |||||||||||||||||||||||||| ||||  |||||||||||||||||| ||||||||
Sbjct: 475 gcgggggtggagcagggtgggggaatccgacatgtgtgtgtcccagcatcctgcagaaag 416

                                                                       
Query: 119 gacaacatcagccttgcctaagaatgctttgcactcaactccagccaggttgctgagatg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gacaacatcagccttgcctaagaatgctttgcactcaactccagccaggttgctgagatg 356

                                                                       
Query: 179 ctcaacatctggccagtcagcagctctcaggcggttagaagacagtaagctcctatctcg 238
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 355 ctcaacatctggccagtcagcagctcccaggcggttagaagacagtaagctcctatctcg 296

                                                                       
Query: 239 atttttgtttggtgccttgtgacgaagacccacaacgccgcgacttcctcgcccttttca 298
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atttttggttggtgccttgtgacgaagacccacaacgccgcgacttcctcgcccttttca 236

                                              
Query: 299 tcccacattgaaagaggaaggaaggagtgaggcgg 333
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tcccacattgaaagaggaaggaaggagtgaggcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 735
Length adjustment: 9
Effective length of query: 324
Effective length of database: 726
Effective search space:   235224
Effective search space used:   235224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)