Query= MSMg01no065_k03.b1 MSMg01no065_k03.b1 CHROMAT_FILE:
MSMg01no065_k03.b1 PHD_FILE: MSMg01no065_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:12 2005
(475 letters)
>mm_chr17_63638040_63638914
Length = 875
Score = 820 bits (424), Expect = 0.0
Identities = 460/476 (96%), Gaps = 10/476 (2%)
Strand = Plus / Plus
Query: 1 catttcatagagcagactggaatggaccttcaatgctagatagagaataacaggcaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 catttcatagagcagactggaatggaccttcaatgctagatagagaataacaggcaatgg 268
Query: 61 tggtggtggctcagaaagagtgaaaaggctggtggtgccactga-aagactggagtgcca 119
|||||||||||||||||||||| || ||||| | || ||| |||||||||||
Sbjct: 269 cagtggtggctcagaaagagtgaa---gcaggtgg----a--gagaaggctggagtgcca 319
Query: 120 gcttggcttcactcaatgaatcgcaattgctcaaagctgcagtatggaagtctgcctgtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcttggcttcactcaatgaatcgcaattgctcaaagctgcagtatggaagtctgcctgtt 379
Query: 180 gggattgtgacatgagacctcacatatgttctcagggttgcctttcagtacaaagaaggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggattgtgacatgagacctcacatatgttctcagggttgcctttcagtacaaagaaggc 439
Query: 240 agggagcaagtactgcttaccctggatacactgcagagttctaagtgtaaacgggaaatg 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agggagcaagcactgcttaccctggatacactgcagagttctaagtgtaaacgggaaatg 499
Query: 300 tgggacacggctttaaaggctagaacataaagaggcatgttcaacccacgtgtctgcaga 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 tgggacacggctttaaaggctagaacataaagaggcatgttcaacccaagtgtctgcaga 559
Query: 360 aatggtctctacacttcactgctcaccctagatttaactgcaaaattccttcaaacgaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatggtctctacacttcactgctcaccctagatttaactgcaaaattccttcaaacgaga 619
Query: 420 cagggcaaaataggagctcagctttcattcttttctgttgacacaactactgatat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagggcaaaataggagctcagctttcattcttttctgttgacacaactactgatat 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_k03.g1 MSMg01no065_k03.g1 CHROMAT_FILE:
MSMg01no065_k03.g1 PHD_FILE: MSMg01no065_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:12 2005
(245 letters)
>mm_chr17_63789258_63789902
Length = 645
Score = 369 bits (191), Expect = e-107
Identities = 220/245 (89%), Gaps = 24/245 (9%)
Strand = Plus / Minus
Query: 1 agaattaattatgaattacttatgctatgtcataacagcaatgaacacttggtcttaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agaattaattatgaattacttatgctatgtcataacagcaatgaacacttggtcttaaac 258
Query: 61 tggaagaccataataggaaagaataagtgtggatgtcggtctatctatctatctactgac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tggaagaccataataggaaagaataagtgtggatgtcggtctatctatctatctact--- 201
Query: 121 agacagacagacagacagacagacagacagacagacagacagacaaatgttttagggaaa 180
|||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ---------------------gacagacagacagacagacagacaaatgttttagggaaa 162
Query: 181 tggagttggttgcttgcagctgagccaagactagaaatgtattgtaggtggctctctcaa 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 161 tggagttggttgcttgcagctgagccaagactagaaatgtattgtgggtggctctctcaa 102
Query: 241 gttaa 245
|||||
Sbjct: 101 gttaa 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
