BAC Information

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BAC

Clone NameMSMg01-066F04
Chromosome17 (Build37)
Map Location 39,984,949 - 39,985,283
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066F04.T7 (MSMg01no066_f04.b1)MSMg01-066F04.TJ (MSMg01no066_f04.g1)
ACCAG291322AG291323
length715676
length of high quality
(start - end)
361 (73 - 433)579 (34 - 612)
definitionCHROMAT_FILE: MSMg01no066_f04.b1 PHD_FILE: MSMg01no066_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:05 2005CHROMAT_FILE: MSMg01no066_f04.g1 PHD_FILE: MSMg01no066_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:05 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAGTAAGTGCGGGTCATAAGCTTGCGT
TGATTAAGTCCCTGCCCTTTGTACCACCGCCCGTCGCTACTACCGATTGG
ATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCC
CTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAA
AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAACGG
GAGACTGTGGAGGAGCGGCGGCGTGGCCCGCTCTCCCCGTCTTGTGTGTG
TCCTCGCCGGGAGGCGCGTGCGTCCCGGGTCCCGTCGCCCGCGTGTGGAG
CGAGGTGTCTGGAGTGAGGTGAGAGAAGGGGTGTCTTTTTCTTATCTTCT
TTCTTTTCTTTTTTTTCCTCCCCCCTCTCCTTTTTCTTTTTCTCTTTGAT
TTTTCTTTTCTTTTTTTTTTCTTCACCTATTTCTCCCTCTTTTCCTTTCC
CTCTCTTTCTCTTCCCCCATTTCTCTCCTTCCCCTTCTTTTTTTCTTGTT
TTCTTCTCCTCATCCTCTATTTTCCTTCTTTTTCTTTTCCCCCCTCTTCC
TTCTTTATTCCTCTCTTTTTTTTTTTGCTCTCCCTTCTTTTTTTTTTCTC
TCCTCCCTCCCCCCC
TGCGGCGCTAATACACTCCTATAGTCCGAGGATCCGCGGAATTCCTCGTT
CATGGCGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACG
GGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGT
GTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGG
ACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGT
TCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCA
TGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTG
TCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGC
AGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCT
TTGCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCT
GCCCGGCGGGTCATGGGAATAACGCCGCCGCATCGCCAGTCGGCATCGTT
TATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTC
GTTCTTGATTAATGAAAACATTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_f04.b1 MSMg01no066_f04.b1 CHROMAT_FILE:
MSMg01no066_f04.b1 PHD_FILE: MSMg01no066_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:05 2005
         (361 letters)



>mm_chr17_39984723_39985483
          Length = 761

 Score =  561 bits (290), Expect = e-164
 Identities = 331/362 (91%), Gaps = 28/362 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtaagtgcgggtcataagcttgcgttgattaagtccctgccctttgtac-caccgcc 59
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 227 ccagtaagtgcgggccataagcttgcgttgattaagtccctgccctttgtacacaccgcc 286

                                                                       
Query: 60  cgtcgctactaccgattggatggtttagtgaggccctcggatcggccccgccggggtcgg 119
           |||||||||||||||||||||||||||||||                           ||
Sbjct: 287 cgtcgctactaccgattggatggtttagtga---------------------------gg 319

                                                                       
Query: 120 cccacggccctggcggagcgctgagaagacggtcgaacttgactatctagaggaagtaaa 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cccacggccctggtggagcgctgagaagacggtcgaacttgactatctagaggaagtaaa 379

                                                                       
Query: 180 agtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggagactgtgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggagactgtgga 439

                                                                       
Query: 240 ggagcggcggcgtggcccgctctccccgtcttgtgtgtgtcctcgccgggaggcgcgtgc 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggagcggcggcgtggctcgctctccccgtcttgtgtgtgtcctcgccgggaggcgcgtgc 499

                                                                       
Query: 300 gtcccgggtcccgtcgcccgcgtgtggagcgaggtgtctggagtgaggtgagagaagggg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtcccgggtcccgtcgcccgcgtgtggagcgaggtgtctggagtgaggtgagagaagggg 559

             
Query: 360 tg 361
           ||
Sbjct: 560 tg 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)