BAC Information

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BAC

Clone NameMSMg01-068A17
Chromosome17 (Build37)
Map Location 22,677,693 - 22,678,008
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik
Downstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068A17.T7 (MSMg01no068_a17.b1)MSMg01-068A17.TJ (MSMg01no068_a17.g1)
ACCAG292632AG292633
length706708
length of high quality
(start - end)
320 (46 - 365)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no068_a17.b1 PHD_FILE: MSMg01no068_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:20 2005CHROMAT_FILE: MSMg01no068_a17.g1 PHD_FILE: MSMg01no068_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATCACCATCATTTGAATTCTTTGCTTAGTACATTCTTTGACAT
ATACTCTCACATAAGCCTATGATTGCAATATTTGAAAATCATGTCACTTT
GATGTCTCCATATTTTCATTTGTCTATATCTATATGTGGGAACCTATATG
TGGGAACAGAACACTGGTTGTACTATTGTTAATCTGTATTCTTGCAGTGT
TTGGGTTTGTAATAATCAAGTGAGCTATGCTCAGAACACACATGAGATTT
CTTTAATAATCTCTAAATACATCTCTACCTCAATGGCTACATTTTCAGCA
TATATGTTCTTTTCCATGAGAATTATCATTCCTCACCATTACAATAAAGA
ATATTAACTGTAAATTTCATAACTATGCAATATGAAATATCACTTAAGAT
CTTTCAGCAATCTGTAGGTTGCCATGTTGTCTTATTGACAGTGCCCTTTG
CCTTACAGAGATGCACAGTTTCATGAGGTTCCAATTTGTCAATTGTGATC
TTAGAGCTTGAGACACTAGTATTTTGTTTAGGAAAGATTCTCCTCTGCCC
ATGTGTTACAGGCTTTTCCCCACTTAATCTGCTATTATTTTCAGTGTATC
TCCTGTTACTTGNAAGTCCTTGATCCACTTGGACCTCAGCTTTGTACAAA
GAGATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTTGTTCTTTTTAAAAATTGAA
GTATCTTGCTTTGAGGCTATTTGAAGTTACCCTCTCCCAAAAAATTACTG
TCAAAAAATTGACAGTGTCCTTTTCAATTTTATGAGGTCCATTGTTGATA
TTAGAGCATAAGACATTTGTGTTCTGATTTAGGTCCCACGTGCTACAATC
CCAATCAGGCAGTCAAACCTACCTGTCAGTGTCATACTGGCAATCTTATT
TTCTGGGTAACAGAAGGTTTTCTGGTGTAATCTAAGGCTAGCTGTACAGA
AAGGAGAAAATATTTTTTTTCACCCCCCACCCTGGGAACCTGGCCAAACG
CCAATAATAAGGAATATCATAGGCCTTAGAAGGAAACCCATTACTGACGC
TTGCTACATGTTCTAAAGTCTCCGTTCACACCTATACCCTGATGCTGCTT
TCAGTCCGGATCAAACAAATTTTAGTTTTAATGGGCAACAGTCATTTCAG
AGACTCCAAACTAACCAAGTACTGAGAATAGCTGACTTCTTACAGTACAA
CCTATAACTGGAAATCCAAAATTACCACATATGATATTATTCTCAGTGAA
ATTCTATAGAATTAATAACTAAAGAGGAACTGTCTAAAAAATTGCATGTC
CTCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_a17.b1 MSMg01no068_a17.b1 CHROMAT_FILE:
MSMg01no068_a17.b1 PHD_FILE: MSMg01no068_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:20 2005
         (320 letters)



>mm_chr17_22677489_22678208
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatcaccatcatttgaattctttgcttagtacattctttgacatatactctca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatcaccattatttgaattctttgcttagtacattctttgacatatactctca 264

                                                                       
Query: 65  cataagcctatgattgcaatatttgaaaatcatgtcactttgatgtctccatattttcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataagcctatgattgcaatatttgaaaatcatgtcactttgatgtctccatattttcat 324

                                                                       
Query: 125 ttgtctatatctatatgtgggaacctatatgtgggaacagaacactggttgtactattgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 ttgtctatatctatatgtgggaacctatatgtgggaacagaacactggttgtattattgt 384

                                                                       
Query: 185 taatctgtattcttgcagtgtttgggtttgtaataatcaagtgagctatgctcagaacac 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatctgtattcttgcagtgtttgggtttgtaataatcaagtgagctatgctcagaacac 444

                                                                       
Query: 245 acatgagatttctttaataatctctaaatacatctctacctcaatggctacattttcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatgagatttctttaataatctctaaatacatctctacctcaatggctacattttcagc 504

                           
Query: 305 atatatgttcttttcc 320
           ||||||||||||||||
Sbjct: 505 atatatgttcttttcc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)