BAC Information

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BAC

Clone NameMSMg01-068B06
Chromosome17 (Build37)
Map Location 15,368,956 - 15,479,248
singlet/doubletdoublet
Overlap geneC330048F19, LOC664953
Upstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Downstream geneDll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068B06.T7 (MSMg01no068_b06.b1)MSMg01-068B06.TJ (MSMg01no068_b06.g1)
ACCAG292658AG292659
length709710
length of high quality
(start - end)
323 (50 - 372)292 (81 - 372)
definitionCHROMAT_FILE: MSMg01no068_b06.b1 PHD_FILE: MSMg01no068_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:23 2005CHROMAT_FILE: MSMg01no068_b06.g1 PHD_FILE: MSMg01no068_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,368,956 - 15,369,272)(15,478,958 - 15,479,248)
sequence
NNAAAGTCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAGTGGAATCCAATACCAAACATGCTCTCTGTGACACCCA
GAGATGAGGTGCAGACCAGACAGCCATACCTAGGGCTGCTTACACCCAGC
ACTCGAAGGTGAGACCCAAGCTTCAAGCTGCAGGCAAAGCTCTACTTGGA
GAATGACATGAAAGGTGTACCTGAATTCCTTTTCTTGGGTCCTCTTGATT
AAGCTGAAGATTCTTGTGGAAGGAGCTAACCCTGGGCACCACACAGGAAG
CGAGACAAGAATATAGTCTTGCTGTGCTCAAGGTGGTCTACAGGTGAGAG
CGTGTGCCCAGTGTTGAGTATTATCCTCACAACCACTTACAGAAGATACA
TGGAAGGAGCAGGTTTCCCAGAAGCCAGAGGAGAGAAGCCTTTCCATGGA
GATGTTCTTGGGAGCTCCCAATACTGCAAAGAAGGCAGACAGGACAGAAG
CCAGAGAAGAGAATCAGCACAGCTGGTGGTCACTCCTAGAAACTTAGCTA
TGAAGGAAAGGTGTTCTCAGGACAAAGCCACTGGAATATAGACAAAGAAA
ATGTATGACCACCACACTTCTAATATCAAGAGGTCTTTGGGCACATGTGG
TCCTTACATCTCACCTTTCAAAAGATGACAAAATATCCCCTTCTACCTCC
CTAAAAGGA
TTTTTATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTTTTAACAAGGCAGTA
AGCGCCTTTGTTTGTTGAGCCATCCCACTGGCCCTAAACTGTTTTAAATG
GTTTCCAACATGAGCTCAGAGATTCTCTGAAGTTTGTTTTGCTTCTAGGA
CTTGAACTATAAAGTGTGAAACAGGAACAATGTATCTTTCCTGTTTCAAG
GCTCCTTCTGAGAAGTGCGGTAGTTGACAGAAAACACTGCTGGCTCCGCG
GTAGGCACCTCTGCAGGCACCTCTGGGTTGAGAGGCGGCTTCTGCATGGC
TGGCTGGGCTCTGAGCATGAATTTTGTATGCTCGCTGCCCAAGGAAGGGT
ACATGCGAAAGGATCTAGGTTCCAGAGGGCAAGTGAGAAAGACCTTCAAG
TTTTGGTTTCTTCTTAAGGTGACAAGAAAGCTGTCCCTAGTTTTATACTT
AACCACGAAACTTATTGATTATTCTAACTCGTAAACAATAGCTGCTCAGG
ACAATTTAAAAGCAGAGACAAGTATAAAAGTGAATGTTTCCATCTGTGGC
TATGTTCCTGTGCTGGCCTGTACACATGGCTATTCTTTTTAAAGAGTTTG
AATTATGCATTGTGGTGCCACTTTATAATCTTGCTGTTATTTACATAGCC
GTGTGCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_b06.b1 MSMg01no068_b06.b1 CHROMAT_FILE:
MSMg01no068_b06.b1 PHD_FILE: MSMg01no068_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:23 2005
         (323 letters)



>mm_chr17_15368752_15369474
          Length = 723

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagtggaatccaataccaaacatgctctctgtgacacccagagatgaggtgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagtggaatccaataccaaacatgctctctgtgacacccagagatgaggtgca 264

                                                                       
Query: 65  gaccagacagccatacctagggctgcttacacccagcactcgaaggtgagacccaagctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaccagacagccatacctagggctgcttacacccagcactcgaaggtgagacccaagctt 324

                                                                       
Query: 125 caagctgcaggcaaagctctacttggagaatgacatgaaaggtgtacctgaattcctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caagctgcaggcaaagctctacttggagaatgacatgaaaggtgtacctgaattcctttt 384

                                                                       
Query: 185 cttgggtcctcttgattaagctgaagattcttgtggaaggagctaaccctgggcaccaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgggtcctcttgattaagctgaagattcttgtggaaggagctaaccctgggcaccaca 444

                                                                       
Query: 245 caggaagcgagacaagaatatagtcttgctgtgctcaaggtggtctacaggtgagagcgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaagcgagacaagaatatagtcttgctgtgctcaaggtggtctacaggtgagagcgt 504

                            
Query: 305 gtgcccagtgttgagta 321
           |||||||||||||||||
Sbjct: 505 gtgcccagtgttgagta 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_b06.g1 MSMg01no068_b06.g1 CHROMAT_FILE:
MSMg01no068_b06.g1 PHD_FILE: MSMg01no068_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:23 2005
         (292 letters)



>mm_chr17_15478758_15479449
          Length = 692

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtttttaacaaggcagtaagcgcctttgtttgttgagccatcccactggccctaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aggtttttaacaaggcagtaagcgcctttgtttgttgagccatcccactggccctaaact 432

                                                                       
Query: 61  gttttaaatggtttccaacatgagctcagagattctctgaagtttgttttgcttctagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttttaaatggtttccaacatgagctcagagattctctgaagtttgttttgcttctagga 372

                                                                       
Query: 121 cttgaactataaagtgtgaaacaggaacaatgtatctttcctgtttcaaggctccttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cttgaactataaagtgtgaaacaggaacaatgtatctttcctgtttcaaggctccttctg 312

                                                                       
Query: 181 agaagtgcggtagttgacagaaaacactgctggctccgcggtaggcacctctgcaggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agaagtgcggtagttgacagaaaacactgctggctccgcggtaggcacctctgcaggcac 252

                                                              
Query: 241 ctctgggttgagaggcggcttctgcatggctggctgggctctgagcatgaa 291
           |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 251 ctctgggttgagaggcggcttctgcatggctggctgtgctctgagcatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)