XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGAATTCC
AGTATTCAATAGCCTGAGGCTGGAGGACAGTCTGGAATACATTGTAAAAT
TGTGAGTTAATCACTACTTTCAAAGAACATTTAAAAATAAACAAAAAGTC
TTCATATGAATGCTCTAGTTTATATTTCTCCCAACTTTCCAGGTGACCTG
ACTGTACAAATTCTTGCAGATACTTACCTGTCTGGTACTTGTTTTTGTAT
CTATGTCTGTTGTTCAGGGATTTATCTTCGGGTATTCACTATGGAATGAA
CCTTCCTTCCTGGGAATCAATGAATAAAGGCTTGCTTTCATGACCCAATT
AGATATTTTATGTCTCTATCATTTTCAATAAAATGTCTGCTCCTACAATT
AAGCATTTATCATTTAATTATATGTTACTGGTTTTGTTATTTCTGTACTT
TGGAAGCTGCTCTTTTATATCTGCATCGGAATATTTGCTTCTCCCCATTT
TATCCTTTGATCTGTGTTTTGACTACCAAAGGATTTAGTTTTATTTACTT
TTTGTGCTTTAAAGTGTAAGATGGAACATCCGTCTGCTCTAATGTAAAGT
TACATGCGATTGATCAACTGATCAAACATTAGTAATTGATAGAAAACATT
GTGTCATCAAAATACTCTTTGGAATGTTGTCATGAATGA

NNCCTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
GATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAG
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTGGCCAAATGGATGGACCTGTAGGGCATCATCCTGA
GTGAGGTAACACATTCCCAAAGGAATTCACACTATATGTACTCTCTGAAA
AGTGGATATTACCCCTTAACCTAATATACCCAAGATAAATTATACACTTT

Query= MSMg01no068_d01.b1 MSMg01no068_d01.b1 CHROMAT_FILE:
MSMg01no068_d01.b1 PHD_FILE: MSMg01no068_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:32 2005
         (649 letters)



>mm_chr17_89873206_89874254
          Length = 1049

 Score = 1195 bits (618), Expect = 0.0
 Identities = 639/646 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccagtattcaatagcctgaggctggaggacagtctggaatacattgtaaaattgt 63
           |||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 gaattccagtattcaagaggctgaggctggaggacagtctggaatacattgtaagattgt 263

                                                                       
Query: 64  gagttaatcactactttcaaagaacatttaaaaataaacaaaaagtcttcatatgaatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagttaatcactactttcaaagaacatttaaaaataaacaaaaagtcttcatatgaatgc 323

                                                                       
Query: 124 tctagtttatatttctcccaactttccaggtgacctgactgtacaaattcttgcagatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctagtttatatttctcccaactttccaggtgacctgactgtacaaattcttgcagatac 383

                                                                       
Query: 184 ttacctgtctggtacttgtttttgtatctatgtctgttgttcagggatttatcttcgggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacctgtctggtacttgtttttgtatctatgtctgttgttcagggatttatcttcgggt 443

                                                                       
Query: 244 attcactatggaatgaaccttccttcctgggaatcaatgaataaaggcttgctttcatga 303
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 attcactatggaatgagccttccttcctgggaatcaatgaattaaggcttgctttcatga 503

                                                                       
Query: 304 cccaattagatattttatgtctctatcattttcaataaaatgtctgctcctacaattaag 363
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccaattagatattttatgtttctatcattttcaataaaatgtctgctcctacaattaag 563

                                                                       
Query: 364 catttatcatttaattatatgttactggttttgttatttctgtactttggaagctgctct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catttatcatttaattatatgttactggttttgttatttctgtactttggaagctgctct 623

                                                                       
Query: 424 tttatatctgcatcggaatatttgcttctccccattttatcctttgatctgtgttttgac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttatatctgcatcggaatatttgcttctccccattttatcctttgatctgtgttttgac 683

                                                                       
Query: 484 taccaaaggatttagttttatttactttttgtgctttaaagtgtaagatggaacatccgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taccaaaggatttagttttatttactttttgtgctttaaagtgtaagatggaacatccgt 743

                                                                       
Query: 544 ctgctctaatgtaaagttacatgcgattgatcaactgatcaaacattagtaattgataga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgctctaatgtaaagttacatgcgattgatcaactgatcaaacattagtaattgataga 803

                                                         
Query: 604 aaacattgtgtcatcaaaatactctttggaatgttgtcatgaatga 649
           ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 804 aaacattgtgtcatcaaaataatctttggaatgttgtcatgaatga 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)