BAC Information

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BAC

Clone NameMSMg01-068N11
Chromosome17 (Build37)
Map Location 74,490,154 - 74,490,583
singlet/doubletsinglet
Overlap genenone
Upstream geneLycat, LOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2
Downstream geneMemo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N11.T7 (MSMg01no068_n11.b1)MSMg01-068N11.TJ (MSMg01no068_n11.g1)
ACCAG293241AG293242
length691691
length of high quality
(start - end)
441 (68 - 508)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no068_n11.b1 PHD_FILE: MSMg01no068_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:25 2005CHROMAT_FILE: MSMg01no068_n11.g1 PHD_FILE: MSMg01no068_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAATTCA
CAGTCTCTGCCTCAGAGACAGAACTGTATAGAAAAGGGGAGAGTTGATGT
CATAAATTCAATTAATTTGCCATAATATAAAAGTAAACAATAGCCAACTC
TAGCAGAAATGATATGATCTGCAAAAATTTGGTAGAGGTCAAAGCCAAGG
GAAGGAAAGTAAGAGAAACTAGTACTTGGAGAGAGATTAAAAATGTTATT
TTCTCCCTGTACAGGGACAAAACAGGGCTCACTTTATTTTTTTTTTTATT
TTTATTTTTTAAAGATTTATTTATTTATTATATCTAAGTACACTGTAGCT
GTCTTCAGACACTCCAGAAGAGGGCGCCAGATCTTGTTACGGATGGTTGT
GAGCCACCATGCGGTTGCTGGGATTTGAACTCCAGACCTTCGGAAGAGCA
GTCGGTTGCTCTTACCCACTGAGCCATCTCACCAGTCCCCCAGGGCTCAC
TTTATTTAGAAAGCATAATACTAATAATTCTCTCCTAAACTTAATCAGAT
GATCAAAATGTTACAATTGAAGTCCTTACTTGCTCCTGCTCCTCCTGTTC
TTCCCTTCCCTTTTGTTTTCTGATACAGTTTGCGTGTGTGTTTCTGTGTG
CGTGTTGTGTTGCTTGCGCTTTCTTCTGTTTCCTTTATCTC
NCCTCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTT
TTTAATGGGTTTATTTGATTTTCTGGAGTCCAGCTTCTTGAGTTCTTTGT
ATGCACTGGATATTAGTCCCCTATCTGATTGGACTAATACCCCTATAGGA
TTGGTAAAGATCCTTTCCCAATCTGTTGGTGACCTTTTTGTCTTATTGAC
AGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATAAGGTCCCATTTGT
CAATTCTCGATGTTACAGCATCTGTCATTGCTGTTCTGTTTAGGAATTTT
TCCCCTGTGCCCATATCTTCCAGACTTTTCCCCATTTTCTCCTCTATAAG
TTTCAGTGTCTCTGGTTTTATGTGTAGGTCCTTGATATACTTATACTTGA
TCTTTGTACAACAAGATAAGAATGGATCAATTCACATTCTTCTACATGAT
AACAGCCATTTGAGCCTTCATCATTTGTTGAAAATGCTCTGGGTTAGTAC
CATGTCATAGGGTATTTTCGGCATAGCATCTGATCTGCCCATGAACATTA
TTTCTCATCATTTTTTGGCCCTATCATCAATTAATGCTTTGGCTGGCTTT
TTTCCTCTGGATGTTTTCAATTCCTCTGCTTTAGGATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n11.b1 MSMg01no068_n11.b1 CHROMAT_FILE:
MSMg01no068_n11.b1 PHD_FILE: MSMg01no068_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:25 2005
         (441 letters)



>mm_chr17_74490154_74490994
          Length = 841

 Score =  793 bits (410), Expect = 0.0
 Identities = 425/430 (98%), Gaps = 1/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaactgtatagaaaaggggagagttgatgtcataaattcaattaatttgccataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acagaactgtatagaaaaggggagagttgatgtcataaattcaattaatttgccataata 371

                                                                       
Query: 61  taaaagtaaacaatagccaactctagcagaaatgatatgatctgcaaaaatttggtagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taaaagtaaacaatagccaactctagcagaaatgatatgatctgcaaaaatttggtagag 311

                                                                       
Query: 121 gtcaaagccaagggaaggaaagtaagagaaactagtacttggagagagattaaaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtcaaagccaagggaaggaaagtaagagaaactagtacttggagagagattaaaaatgtt 251

                                                                       
Query: 181 attttctccctgtacagggacaaaacagggctcactttattttttttttt-atttttatt 239
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 250 attttctccctgtacagggacaaaacaaggctcactttattttttttttttatttttatt 191

                                                                       
Query: 240 ttttaaagatttatttatttattatatctaagtacactgtagctgtcttcagacactcca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttttaaagatttatttatttattatatctaagtacactgtagctgtcttcagacactcca 131

                                                                       
Query: 300 gaagagggcgccagatcttgttacggatggttgtgagccaccatgcggttgctgggattt 359
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 130 gaagagggcgccagatcttgttacggatggttgtgagccaccatgtggttgctgggattt 71

                                                                       
Query: 360 gaactccagaccttcggaagagcagtcggttgctcttacccactgagccatctcaccagt 419
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 70  gaactccagaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagc 11

                     
Query: 420 cccccagggc 429
           ||||||||||
Sbjct: 10  cccccagggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)