BAC Information

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BAC

Clone NameMSMg01-070J18
Chromosome17 (Build37)
Map Location 16,221,021 - 16,221,488
singlet/doubletsinglet
Overlap genenone
Upstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070J18.T7 (MSMg01no070_j18.b1)MSMg01-070J18.TJ (MSMg01no070_j18.g1)
ACCAG294589AG294590
length713712
length of high quality
(start - end)
471 (38 - 508)441 (67 - 507)
definitionCHROMAT_FILE: MSMg01no070_j18.b1 PHD_FILE: MSMg01no070_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:44 2005CHROMAT_FILE: MSMg01no070_j18.g1 PHD_FILE: MSMg01no070_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTATACGACTCCTATAGTTTCGCAGAATCCGCGGAATTCAGAG
TTTAACTCCATCTATAATTTCTAATATATTTTATTTTCTTGAGTTGGGTG
ACTGGTATTCAAAAGTTCTTATAAAATTTAAAAGAATCATAAGGAGTTCC
AATAATTGAACTCTAGCAGTTATAATCTAGTCTAGATCTTTGTTTTCATT
TCTGTACATTTGTTCTATATAGTGAAAAATTAAGACATTGCCAAGGGAAA
TTTTAGAGGACTGGCTTCTCATTGCTTAATGGTTCAGTTACTTATCCAGA
GTCAACAGGCTTTATATTCTCATGTATAGTTTTTCAGAAATAACTTTATT
TTCTCCAAGCATTCATATATGTAAATATCTGGTATCACTGTTTGCTTAAT
GACATGATTTTTACTTCTGTGAAATGTTTTTAGTGCCTTGCTTTGTTCAT
ATCCTGAGTTCTGTCCATTTAACAATATATGCGTTCACAAGTTGCACCGT
ATTCAGTTGTGTACCTATGCCACTGTGCATTAGGCTGGTTTTCATCTGCC
AACAAGATTTGTTGGATTACTTACTACCATGAATCTTCTACAACTCCTCA
CAAGGTTTTATCCTAATTGCCCCAATGCCCCATAGTTGGATACCCAGGTC
ATAATTGCTTGGGTCTCTAAACTTGGTCTTTTACCTTTTTATGCGTGAAA
ATATGGCTCTGAC
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACATAAAACCAGAGGCACTGAAATTTATAGAGG
AAAAAGTGGGGAAAAGCCTCAAAGATATGGGCACTGGGGAAAAATTCCTA
AACAGAACAGTAATGGCTTGTGCTGTAAGATCAAAATTTGACAAATGGGA
CCTCATGAAATTGCAAAGCTTCTGTAAGGCAGAATACATTGTCAATAAGA
CAAAAAGGCAAACAACAGATTGAGAAAGGATTTTTACTAATTCTAAATCT
GATGGGGGACTTATATCCAGTATATACAAAGAGCTCAAGAAGCTGGACTC
CAGAAATTCAAATAACCCCATTAAAAATGGGGTTCAGGGCTAAACAAAGA
ATTCTCAAGTGACAAATACTGAAGGGCTGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATTAGGAAAATGCAAATCATAACAACCCTGAAATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAGTTCAGGTGACAGCAG
ATGCTGGTGAAGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGG
AATGCAAGCTGGTACCACCACTCTGGAAATCAGTCTGGCAGTTCCCCAGA
AAATTTGGACATAGCACTACCATAAGATCCCATCATACCTCTCCCAGGTA
TATACCCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_j18.b1 MSMg01no070_j18.b1 CHROMAT_FILE:
MSMg01no070_j18.b1 PHD_FILE: MSMg01no070_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:44 2005
         (471 letters)



>mm_chr17_16220818_16221688
          Length = 871

 Score =  859 bits (444), Expect = 0.0
 Identities = 462/468 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcagagtttaactccatctataatttctaatatattttattttcttgagttgggtg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagagtttaactcaatctataatttctaatatattttattttcttgagttgggtg 263

                                                                       
Query: 64  actggtattcaaaagttcttataaaatttaaaagaatcataaggagttccaataattgaa 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 actggtattcaaaagttcttataaaatttaaaagaattataaggagttccaataattgaa 323

                                                                       
Query: 124 ctctagcagttataatctagtctagatctttgttttcatttctgtacatttgttctatat 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtagcagttataatctagtctagatctttgttttcatttctgtacatttgttctatat 383

                                                                       
Query: 184 agtgaaaaattaagacattgccaagggaaattttagaggactggcttctcattgcttaat 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgaaaaattaagacattgccaagagaaattttagaggactggcttctcattgcttaat 443

                                                                       
Query: 244 ggttcagttacttatccagagtcaacaggctttatattctcatgtatagtttttcagaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggttcagttacttatccagagtcaacaggctttatattctcatgtatagtttttcagaaa 503

                                                                       
Query: 304 taactttattttctccaagcattcatatatgtaaatatctggtatcactgtttgcttaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taactttattttctccaagcattcatatatgtaaatatctggtatcactgtttgcttaat 563

                                                                       
Query: 364 gacatgatttttacttctgtgaaatgtttttagtgccttgctttgttcatatcctgagtt 423
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 564 gacatgatttttacttctgtgaaatgtttttagtgcctcgttttgttcatatcctgagtt 623

                                                           
Query: 424 ctgtccatttaacaatatatgcgttcacaagttgcaccgtattcagtt 471
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtccatttaacaatatatgcgttcacaagttgcaccgtattcagtt 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)