BAC Information

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BAC

Clone NameMSMg01-071F06
Chromosome17 (Build37)
Map Location 82,964,281 - 82,964,857
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071F06.T7 (MSMg01no071_f06.b1)MSMg01-071F06.TJ (MSMg01no071_f06.g1)
ACCAG295138AG295139
length695697
length of high quality
(start - end)
320 (320 - 639)577 (72 - 648)
definitionCHROMAT_FILE: MSMg01no071_f06.b1 PHD_FILE: MSMg01no071_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:41 2005CHROMAT_FILE: MSMg01no071_f06.g1 PHD_FILE: MSMg01no071_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCGGAGGGATGCGCGGAAT
TCTCTACTAACAACAGACTCTACTTTTTAATAGGTTTATTTGGTTTACTG
GAGTCTGCCTGGTGAGCTCTTTGTATATATTGGATATTAACCCCTATCAG
ATGTAAGGTTTTTAAAGATTTTTAACCAATCTGTAGGTTGCCATTTTGTC
CTATTGGCAGTGTTCTTTTTCTTACAGAAGCTTTGCAATTTTATGAGGTC
CCATTTGTCAATTCTTGATCTTAGGGAATAGGCCATTGGTGTTCTATTCA
GGAAGTTTTCTTCCTTGTTCAAATATTCGAGGCTCTTCCCCACTTTCTCT
TCTATTAGATTTAGTGTATTTGATTTTATGTGAAGGTCCTTGATCCACTA
GGACTTGAGTTTTGTGCAAGGAGATAGGTATGGATCAATTTTCATTCTTC
TATATGCAGACCACCAGTTGAACCAGCACCATTTGTTAAAAATGCTGTCT
TTTTCCTTCTGAATGGTTTTAGCTTCTTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATATCTGGATCTTCAATTCTGTACCAATACCATGCAG
TATTTATCTCTATTGCTTTATAGTATATCTTGAGGTCAGGGATGTTGATT
CCTCCAGAAGTTCTTTTATTGTTGAAAATAGTTCTTTCTATCCTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGGTTGAATCATTTCAGTCAACCCTCT
CTTACCCCAGCAGTGGTTTTCATAGCTAACATGTGCTAATCAACCAACCT
GAAGACCAAGCCTCAGTAATATTGAATTCTGAAATTGACTTAAGGAGGAA
ATAGCTGGACTATTAGTCTGGAACCCAAGAAACATTTCTTTCTGAAACTC
ATTGCAAAGAAACTCGCATTGTTTTTAGTTTCTGAGAACTTTTAATCTTC
AATCTGAAATAATTTTTCATGTGAAATATCAATCTAAAGCTTAGAAATAT
AAAGCATCTTGTACTACTTACATGAGACATTTGAAATACCTGGAAGGGAG
TGTGATTTATGAGTATTAGTAAGGCCTGAGCCTCAAGAATATGAAATTGA
ATTCATTACAAATATTATTTTGTTGGAAGTCCTTAGCTTGTTTTAAGGCT
TTGTTGTGGAAAATGGAGGAGTTTAATCATGGAAGGAACTGAGAGATTAT
GCCTCTATGTCTCAGTAGTTGAGCAATTGCAAAAGACTCTATCTCTTTTT
GTGAGAACAGCAATATTTCTGTTTTGAATGTCCCTCAAGGAAGATATGAG
CAGTTCCACTGACAGACTACCAGATGTTTCTTCCAGCCTCACAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_f06.g1 MSMg01no071_f06.g1 CHROMAT_FILE:
MSMg01no071_f06.g1 PHD_FILE: MSMg01no071_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:41 2005
         (577 letters)



>mm_chr17_82964081_82965057
          Length = 977

 Score = 1046 bits (541), Expect = 0.0
 Identities = 568/577 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggttgaatcatttcagtcaaccctctcttaccccagcagtggttttcatagctaaca 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 777 catggttgaatcatttcagtcaaccctcccttaccccagcagtggttttcatggctaaca 718

                                                                       
Query: 61  tgtgctaatcaaccaacctgaagaccaagcctcagtaatattgaattctgaaattgactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgtgctaatcaaccaacctgaagaccaagcctcagtaatattgaattctgaaattgactt 658

                                                                       
Query: 121 aaggaggaaatagctggactattagtctggaacccaagaaacatttctttctgaaactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aaggaggaaatagctggactattagtctggaacccaagaaacatttctttctgaaactca 598

                                                                       
Query: 181 ttgcaaagaaactcgcattgtttttagtttctgagaacttttaatcttcaatctgaaata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 597 ttgcaaagaaactcgcattgtttttagtttctgagaacttttaatcttcaatttgaaata 538

                                                                       
Query: 241 atttttcatgtgaaatatcaatctaaagcttagaaatataaagcatcttgtactacttac 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 537 atttttcatgtgaaatatcaatctaaatcttagaaatataaagcatcttgtactacttac 478

                                                                       
Query: 301 atgagacatttgaaatacctggaagggagtgtgatttatgagtattagtaaggcctgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 477 atgagacatttgaaatacctggaagggagtgtgatttatgagtattaataagggctaagc 418

                                                                       
Query: 361 ctcaagaatatgaaattgaattcattacaaatattattttgttggaagtccttagcttgt 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctcaagaatatgagattgaattcattacaaatattattttgttggaagtccttagcttgt 358

                                                                       
Query: 421 tttaaggctttgttgtggaaaatggaggagtttaatcatggaaggaactgagagattatg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 357 tttaaggctttgttgtggaaaatggaggagtttaatcatggaaggaactgagaggttatg 298

                                                                       
Query: 481 cctctatgtctcagtagttgagcaattgcaaaagactctatctctttttgtgagaacagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cctctatgtctcagtagttgagcaattgcaaaagactctatctctttttgtgagaacagc 238

                                                
Query: 541 aatatttctgttttgaatgtccctcaaggaagatatg 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aatatttctgttttgaatgtccctcaaggaagatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)