BAC Information

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BAC

Clone NameMSMg01-072K17
Chromosome17 (Build37)
Map Location 33,694,386 - 33,694,906
singlet/doubletsinglet
Overlap geneMyo1f
Upstream geneLOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10
Downstream geneZfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072K17.T7 (MSMg01no072_k17.b1)MSMg01-072K17.TJ (MSMg01no072_k17.g1)
ACCAG296154AG296155
length700704
length of high quality
(start - end)
551 (38 - 588)627 (66 - 692)
definitionCHROMAT_FILE: MSMg01no072_k17.b1 PHD_FILE: MSMg01no072_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:29 2005CHROMAT_FILE: MSMg01no072_k17.g1 PHD_FILE: MSMg01no072_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTAAACGACTCCTATATTCCGAGAATCCGCGGAATTCTGGG
CTGATACCCTAGTTTATGCAGTGCTGGGGATGGAACCCAGGCTTCCTGCA
TGCTAGGAAACACTCCATCAGCTGAGCTCCAGCTTGCTCCTATTTTGGTT
TTATGGAGACAAGGTCTTGCTAGGTAGTTCATGCTGGCCTCCAACTCATG
ATTCTCAGTGTTTAGCATTGTTCACTTGATGTATTTCTCCCCTCTCACAT
CTGTCTGCTGAGCAGCCTGTTGACTAAGCATTTCAGTGTTGGCAGCCTAG
GAGGGGTTTTCCTTCCTTTCAAGTAGCAAATCTCTTCCTGTTTTTCTCTT
TCTCGTTCGCTTTCTTCCTTTCTTCCTCCCTCCCTCTTCCTTTCTTTCTT
TCTTTCACTCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTC
TCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTT
TCTTCCTCTTTTTCTTTCCTCCTCCTTTTCTTTCCTCCTCCTCCTCTTCC
TTCTCCTCTTTCTTTTAAAAGAATGGGCTTCATGAACCTTATGCTGGCCT
TATTTTTGTCTATTCATGCAGGATTTTTAACTTCTGCCTTTACCTCCCAC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGAATAGAACAACAATGGCTTGTGCTGTAAGATG
GAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAA
AAGACAATAAAGGCCACCTTTATTGTCACAATAAGACAAAAAGGCCACCA
ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT
ATCCAATATATATAAAGAACACAATAAGGTGGACTCCAGAAAATCAAATA
ACCCCATTAAAAAATGGGGCTTAGAGTTAAACAAAGAATTCTCCCCTGAG
GAATGGCTCACCGAATGGCCGAGAAGCACATGAAAAATGTTCAGCATCCT
TAATCATCACGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
ACAGTCAGAATGGCTAAGATCAAATATTCAGGTGACAACAGATGCTGGCG
AAAATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGAC
ATAGTACTACCTGAGGATCCAACAATACCTCTCCTGGGCATATATCCAGA
AGATGTTCCAACTGATATGAAGGACACATGCTCTACTATGTTCATAGCAG
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_k17.b1 MSMg01no072_k17.b1 CHROMAT_FILE:
MSMg01no072_k17.b1 PHD_FILE: MSMg01no072_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:29 2005
         (551 letters)



>mm_chr17_33694218_33695168
          Length = 951

 Score =  888 bits (459), Expect = 0.0
 Identities = 515/551 (93%), Gaps = 33/551 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctgggctgatac---cctagtttatgcagtgctggggatggaacccaggcttcct 60
           |||||||||||||  ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattctgggctg--acaaacctagtttatgcagtgctggggatggaacccaggcttcct 632

                                                                       
Query: 61  gcatgctaggaaacactccatcagctgagctccagcttgctcctattttggttttatgga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaatgctaggaaacactccatcagctgagctccagcttgctcctattttggttttatgga 572

                                                                       
Query: 121 gacaaggtcttgctaggtagttcatgctggcctccaactcatgattctcagtgtttagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gacaaggtcttgctaggtagttcatgctggcctccaactcatgattctcagtgtttagca 512

                                                                       
Query: 181 ttgttcacttgatgtatttctcccctctcacatctgtctgctgagcagcctgttgactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttgttcacttgatgtatttctcccctctcacatctgtctgctgagcagcctgttgactaa 452

                                                                       
Query: 241 gcatttcagtgttggcagcctaggaggggttttccttcctttcaagtagcaaatctcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcatttcagtgttggcagcctaggaggggttttccttcctttcaagtagcaaatctcttc 392

                                                                       
Query: 301 ctgtttttctctttctcgttcgctttcttcctttcttcctccctccctcttcctttcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 391 ctgtttttctctttctcgttcgctttcttcctttcttcctccctccctctttctttcttt 332

                                                                       
Query: 361 ctttctttcactctttctttctctctttctttctttctttctttctttctttctttcttt 420
           |||||||    ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctttctt----tctttctttctttctttctttctttctttctttctttctttctttcttt 276

                                                                       
Query: 421 ctttctttctttctttctttctttctttctttctttctctctctctctctctctctctct 480
           |||||  ||||||||  |||||||||||||||||||||                   | |
Sbjct: 275 ctttc--tctttctt--tttctttctttctttctttct-------------------t-t 240

                                                                       
Query: 481 ctttctttctttctttctttctttctttctctttcttcctctttttctttcctcctcctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctttctttctttctttctttctttctttctctttcttcctctttttctttcctcctcctt 180

                      
Query: 541 ttctttcctcc 551
           |||||||||||
Sbjct: 179 ttctttcctcc 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 216
Number of extensions: 54
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)