BAC Information

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BAC

Clone NameMSMg01-072M07
Chromosome17 (Build37)
Map Location 20,254,158 - 20,254,699
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7
Downstream geneFpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072M07.T7 (MSMg01no072_m07.b1)MSMg01-072M07.TJ (MSMg01no072_m07.g1)
ACCAG296228AG296229
length690691
length of high quality
(start - end)		539 (43 - 581)558 (73 - 630)
definitionCHROMAT_FILE: MSMg01no072_m07.b1 PHD_FILE: MSMg01no072_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:37 2005CHROMAT_FILE: MSMg01no072_m07.g1 PHD_FILE: MSMg01no072_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGTGTGTGACTAAGTAAATCTTTGTATTACCTATACCCAAGTAAAG
TGTTATGCAGTACCCTCTAGACTACATACCCAATACATGGTCATTCTTTA
CAACACTCTGGTAATTCACTTGATTTTTGGCCCTAATGGAGGTAGGCATC
TCTGGAGGAAAGCCAAGTAGATTAATTTTTAAAAGTTTACATAAAAAATT
AAATACAAACTGATATATTATATCATAATTGCAGTTGTAGATACCTGATA
CCCAAGAAGATGGTATCTTCTCCTACAATATTTTAACTGTCATATATAGG
TAGGTATCTCCTCCCTCTTTCCAACCTCATCTTTCCGGTGAATTGAAGTA
TGTAACCTATACTTAATTGTGACCCTACCTTTAGGGTCCAAGTTTGCTTT
AATTATTAATATGAACATATTCAGCTTCATTATATTTTGATGTACTCTAA
TTAGGGATACAATATTGATATGAAGAAAACTTCAACTTAACCCTTAACAT
AGGATAGTGGGTATGAAAAAGCAATGAGCTACAGTGCTGAAAATAGTACT
GAGAAAAATTTGAGCACAGGATTTGCTTGTAGATCTAAAAGAAGTTGAGC
TGGAAAATATATTAGAGAGAAGTTGACAGAAACTAAAGCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCGAACTCGAAAAAATTGTACTCACTGTA
TGTAACCGTCCAAATATTGGTATGGTATAGTTGAATGAGGCCTTTTCTTT
TCAGTGTAGAAAGTATGAACAGGGAAAAAGGCACCAATCATAACATCTCC
TTCATGGTGAAATTCTTCAGTGATTTCGAAATAACATCGATTGACATTAA
ACTTTAAATCAGAAGAGACAAATTTGGGAATTTGCAAGAGCAAGAAGATA
AAAATCCAAGAGAACATCCTATTAGCACATTGGTCTCTTCAATGCAGAAT
ATACAGTATCCAGTAAAAATATGCTTGGTTCATGTTTTTGTGACTATGTG
TGTTTTGCATTTGTTGATCACTCAGTTTGACACAAATATTCCAAGGGTTC
AGAAATGCCATTGGGAATTTTTAAACTATCCTTTCCCTTGAACTCTGCTG
CTGAGGACCTTAATGAAGTGAAAAACAATTTCTGAAATATGTTTGCTCAT
ATTCTTCTCTATCCTAAGGCACTATGACTTCAGCAAAGACTACAAATAAC
ACTAGTTTAGGGTTTATCTTCTCTTGGGATGAATTGGCTAACCATATGAA
TCAAGAAACTTTTAATAGGAAAAACAATTTTGGCTGATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_m07.b1 MSMg01no072_m07.b1 CHROMAT_FILE:
MSMg01no072_m07.b1 PHD_FILE: MSMg01no072_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:37 2005
         (539 letters)



>mm_chr17_20253963_20254901
          Length = 939

 Score =  317 bits (164), Expect = 1e-90
 Identities = 444/562 (79%), Gaps = 61/562 (10%)
 Strand = Plus / Plus

                                                                       
Query: 17  tgtgactaagtaaatctttgtattacctataccc--aagtaaagtgttatgcagtacc-- 72
           ||||||||||||||| ||||||||||| ||||||     |||||| | |  ||    |  
Sbjct: 196 tgtgactaagtaaatatttgtattacccataccctt---taaagtctca--ca----caa 246

                                                                       
Query: 73  --ctcta--gactacatacccaatacatggtcattctttacaacactctggt-aattcac 127
             |||||   ||||||||| ||||||||||||||||||| |||||||||  | || ||||
Sbjct: 247 ttctctatcaactacatactcaatacatggtcattcttttcaacactct-atcaagtcac 305

                                                                       
Query: 128 ttgatttttggccctaatggaggtaggcatctctggaggaaagccaagtagattaatttt 187
           ||||| | ||| ||||||||||||||| |||||||||| ||| ||||||||||| |||||
Sbjct: 306 ttgatgtatggtcctaatggaggtaggaatctctggagaaaaaccaagtagatt-atttt 364

                                                                       
Query: 188 taaa-agtttacataaaaaattaaatacaaactgatatattatatca---taa------- 236
           |||| |||||| || | |||||||| | ||||||| || ||||||||   |||       
Sbjct: 365 taaagagtttatattagaaattaaaaataaactgacatcttatatcatagtaaattatcc 424

                                                                       
Query: 237 --ttgcagttgtagatacct-gatacccaagaagatgg---tatcttctcctacaatatt 290
             |||||||| | |||| || ||| ||||||| || ||   |||||||||||| ||||||
Sbjct: 425 tcttgcagttatggata-ctggatgcccaagatgaaggtaatatcttctcctataatatt 483

                                                                       
Query: 291 ttaactgtcatatataggtaggtatctcctc--cctctttcca-acctcatctttccggt 347
           ||||||| ||| ||||||||| |||||| ||  ||||  |||| |||||||||| || ||
Sbjct: 484 ttaactgccatgtataggtagttatctcatcctcctc--tccacacctcatcttccctgt 541

                                                                       
Query: 348 gaattgaagtatgtaacctata-cttaattgtgaccctacctttagggtccaagtttgct 406
           || || |||||  |||| |||| || || |||| || || ||||||||||| | ||||||
Sbjct: 542 gagttaaagtacataacttatacctcaa-tgtggccttatctttagggtcctattttgct 600

                                                                       
Query: 407 ttaatta-----ttaatatgaacatattcagcttc---a---ttatattttgatgtactc 455
           |||||||     ||||| |     | ||  | |||   |   |||||| |||| ||||||
Sbjct: 601 ttaattattaccttaattt-----ttttttgtttctgaattgttatatgttgaggtactc 655

                                                                       
Query: 456 taattagggatacaatattgatatgaagaaaacttcaacttaacccttaacataggatag 515
           ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct: 656 taattagggatacaatattgataggaagaaaacttcaacttaagccataacataggatag 715

                                 
Query: 516 tgggtatgaaaaagcaatgagc 537
           | |||||||||||||| |||||
Sbjct: 716 tcggtatgaaaaagcagtgagc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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