MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-072O24
Chromosome	17 (Build37)
Map Location	53,792,416 - 53,792,982
singlet/doublet	singlet
Overlap gene	Pcaf
Upstream gene	Kcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, EG628822
Downstream gene	Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Link	Open Mouse BAC browser

Click to get alignment info.

name	Kcnh8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211468 MGI:2445160
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668506 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668506
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 7 Proteins pseudo : _no_value

name	EG629036 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629036 MGI:3645732
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 352 ESTs, 5 Proteins

name	LOC668512 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 44 Proteins pseudo : _no_value

name	Efhb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211482 MGI:3045296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668513 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668513
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Rab5a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271457 MGI:105926
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4921523A10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110332 MGI:3612067
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcaf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18519 MGI:1343094
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG628822 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628822 MGI:3648520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 10 Proteins

name	Sgol1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72415 MGI:1919665
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG629065 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629065 MGI:3643187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 102 ESTs, 2 Proteins

name	4932415M13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211496 MGI:3608328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ck-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12706 MGI:88404
definition	note : creatine kinase pseudogene 1 pseudo : _no_value

name	EG637939 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:637939 MGI:3647187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins

name	Sult1c2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69083 MGI:1916333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043826 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 109 ESTs, 2 Proteins

name	LOC100043471 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	EG668523 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668523 MGI:3647884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	LOC629121 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629121
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 11 Proteins pseudo : _no_value

name	Gm324 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224876 MGI:2685170
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins

name	Sult1c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20888 MGI:102928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043829 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043829
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG435531 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435531 MGI:3644507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	Slc5a7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:63993 MGI:1927126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668529 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668529
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 6 Proteins pseudo : _no_value

name	1700025K24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69418 MGI:1916668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Trp53-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22060 MGI:98835
definition	gene_synonym : p53 note : transformation related protein 53, pseudogene pseudo : _no_value

name	LOC240117 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:240117
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Kcnh8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:73532781 GeneID:211468 MGI:2445160
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, subfamily H (eag-related), member 8 transcript_id : NM_001031811.1

name	EG629036 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402048 GeneID:629036 MGI:3645732
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 352 ESTs, 5 Proteins product : predicted gene, EG629036 transcript_id : XM_893860.2

name	Efhb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363913 GeneID:211482 MGI:3045296
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF hand domain family, member B transcript_id : NM_172497.2

name	Rab5a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345611 GeneID:271457 MGI:105926
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB5A, member RAS oncogene family transcript_id : NM_025887.3

name	4921523A10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386939 GeneID:110332 MGI:3612067
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4921523A10 gene transcript_id : NM_173449.2

name	Pcaf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130526 GeneID:18519 MGI:1343094
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : p300/CBP-associated factor transcript_id : NM_020005.3

name	EG628822 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268872 GeneID:628822 MGI:3648520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 10 Proteins product : predicted gene, EG628822 transcript_id : XM_895073.3

name	Sgol1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13386293 GeneID:72415 MGI:1919665
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : shugoshin-like 1 (S. pombe) transcript_id : NM_028232.1

name	EG629065 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268746 GeneID:629065 MGI:3643187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 102 ESTs, 2 Proteins product : predicted gene, EG629065 transcript_id : XM_893884.3

name	4932415M13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376574 GeneID:211496 MGI:3608328
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932415M13 gene transcript_id : NM_177599.3

name	4932415M13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144226231 GeneID:211496 MGI:3608328
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932415M13 gene transcript_id : NM_001037718.2

name	EG637939 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268750 GeneID:637939 MGI:3647187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins product : predicted gene, EG637939 transcript_id : XM_001001994.2

name	Sult1c2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130315 GeneID:69083 MGI:1916333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sulfotransferase family, cytosolic, 1C, member 2 transcript_id : NM_026935.4

name	LOC100043826 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268873 GeneID:100043826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 109 ESTs, 2 Proteins product : similar to mitochondrial ribosomal protein S36 transcript_id : XM_001481116.1

name	Gm324 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82993923 GeneID:224876 MGI:2685170
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins product : gene model 324, (NCBI) transcript_id : XM_140045.4

name	Sult1c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254553 GeneID:20888 MGI:102928
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sulfotransferase family, cytosolic, 1C, member 1 transcript_id : NM_018751.2

name	LOC100043829 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268875 GeneID:100043829
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043829 transcript_id : XM_001481117.1

name	Slc5a7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41055979 GeneID:63993 MGI:1927126
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 5 (choline transporter), member 7 transcript_id : NM_022025.3

name	1700025K24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402057 GeneID:69418 MGI:1916668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700025K24 gene transcript_id : XM_901213.2

name	Kcnh8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:73532782 GeneID:211468 MGI:2445160
definition	GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : potassium voltage-gated channel, subfamily H, member 8 product : potassium voltage-gated channel, subfamily H (eag-related), member 8 protein_id : NP_001026981.1

name	EG629036 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82993904 GeneID:629036 MGI:3645732
definition	codon_start : 1 product : similar to human protein homologous to DROER protein protein_id : XP_898953.1

name	Efhb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369684 GeneID:211482 MGI:3045296
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : EF hand domain family, member B protein_id : NP_766085.1

name	Rab5a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385374 CCDS:CCDS28879.1 GeneID:271457 MGI:105926
definition	GO_component : GO:0005769 - early endosome [Evidence IDA] [Evidence ISS]; GO:0030139 - endocytic vesicle [Evidence IDA]; GO:0045121 - lipid raft [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0001726 - ruffle [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence TAS] [Evidence IDA]; GO:0019001 - guanyl nucleotide binding [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006897 - endocytosis [Evidence IDA]; GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB5A, member RAS oncogene family protein_id : NP_080163.1

name	4921523A10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734092 GeneID:110332 MGI:3612067
definition	codon_start : 1 product : hypothetical protein LOC110332 protein_id : NP_775625.1

name	Pcaf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52345413 CCDS:CCDS28880.1 GeneID:18519 MGI:1343094
definition	GO_component : GO:0000123 - histone acetyltransferase complex [Evidence IDA]; GO:0000776 - kinetochore [Evidence IDA] GO_function : GO:0004406 - H3/H4 histone acetyltransferase activity [Evidence IDA]; GO:0004402 - histone acetyltransferase activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0016573 - histone acetylation [Evidence IDA]; GO:0006473 - protein amino acid acetylation [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence TAS] codon_start : 1 product : p300/CBP-associated factor protein_id : NP_064389.2

name	EG628822 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82993873 GeneID:628822 MGI:3648520
definition	codon_start : 1 product : hypothetical protein protein_id : XP_900166.1

name	Sgol1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386294 CCDS:CCDS28881.1 GeneID:72415 MGI:1919665
definition	GO_component : GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0045132 - meiotic chromosome segregation [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : shugoshin 1A protein product : shugoshin-like 1 protein_id : NP_082508.1

name	EG629065 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268747 GeneID:629065 MGI:3643187
definition	codon_start : 1 product : hypothetical protein protein_id : XP_898977.3

name	4932415M13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243962 GeneID:211496 MGI:3608328
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC211496 isoform 2 protein_id : NP_808267.1

name	4932415M13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83423520 GeneID:211496 MGI:3608328
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC211496 isoform 1 protein_id : NP_001032807.1

name	EG637939 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268751 GeneID:637939 MGI:3647187
definition	codon_start : 1 product : similar to RIKEN cDNA 4932415M13 gene protein_id : XP_001001994.2

name	Sult1c2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328501 CCDS:CCDS28883.1 GeneID:69083 MGI:1916333
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : sulfotransferase family, cytosolic, 1C, member 2 protein_id : NP_081211.3

name	LOC100043826 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268874 GeneID:100043826
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481166.1

name	Gm324 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82993924 GeneID:224876 MGI:2685170
definition	codon_start : 1 product : hypothetical protein protein_id : XP_140045.4

name	Sult1c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254554 CCDS:CCDS28884.1 GeneID:20888 MGI:102928
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0004062 - aryl sulfotransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006790 - sulfur metabolism [Evidence IDA] codon_start : 1 note : sulfotransferase, phenol preferring 2; sulfotransferase family 1A, phenol-preferring, member 2 product : sulfotransferase family, cytosolic, 1C, member 1 protein_id : NP_061221.2

name	LOC100043829 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268876 GeneID:100043829
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481167.1

name	Slc5a7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543741 CCDS:CCDS28885.1 GeneID:63993 MGI:1927126
definition	GO_component : GO:0016021 - integral to membrane [Evidence NAS]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0015220 - choline transporter activity [Evidence IMP]; GO:0005307 - choline:sodium symporter activity [Evidence ISS]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0008292 - acetylcholine biosynthesis [Evidence IMP]; GO:0015871 - choline transport [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0007274 - neuromuscular synaptic transmission [Evidence IMP]; GO:0042136 - neurotransmitter biosynthesis [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IEA]; GO:0007271 - synaptic transmission, cholinergic [Evidence IMP] codon_start : 1 product : solute carrier family 5 (choline transporter), member 7 protein_id : NP_071308.2

name	1700025K24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82993933 GeneID:69418 MGI:1916668
definition	codon_start : 1 product : hypothetical protein LOC69418 protein_id : XP_906306.1

name	LOC668513 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668513
definition	number : 2 pseudo : _no_value

name	LOC668513 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668513
definition	number : 1 pseudo : _no_value

name	LOC100043471 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043471
definition	number : 1 pseudo : _no_value

name	EG668523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668523
definition	number : 2 pseudo : _no_value

name	EG668523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668523
definition	number : 1 pseudo : _no_value

name	LOC240117 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:240117
definition	number : 1 pseudo : _no_value

name	LOC240117 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:240117
definition	number : 2 pseudo : _no_value

name	Trp53-ps (CDS detail)
type	polyA_site
link	vega ensembl
xref
definition	gene_synonym : p53 note : putative

name	Trp53-ps (CDS detail)
type	polyA_signal
link	vega ensembl
xref
definition	gene_synonym : p53 note : putative

name	Ck-ps1 (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	note : region homologous with murine creatine kinase B exon sequences pseudo : _no_value

name	Trp53-ps (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	gene_synonym : p53 note : no similarity to p53 cDNA pseudo : _no_value

name	LOC668506 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268870 GeneID:668506
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 7 Proteins product : similar to 3-phosphoglycerate dehydrogenase pseudo : _no_value transcript_id : XR_035004.1

name	LOC668512 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268871 GeneID:668512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 44 Proteins product : similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudo : _no_value transcript_id : XR_035005.1

name	LOC629121 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268753 GeneID:629121
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 11 Proteins product : similar to Creatine kinase B-type (Creatine kinase B chain) (B-CK) pseudo : _no_value transcript_id : XR_034590.1

name	EG435531 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149268756 GeneID:435531 MGI:3644507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : predicted gene, EG435531 pseudo : _no_value transcript_id : XR_002194.2

name	LOC668529 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268757 GeneID:668529
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 6 Proteins product : similar to Armadillo repeat containing, X-linked 3 pseudo : _no_value transcript_id : XR_034597.1

clone name	MSMg01-145L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375K10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-375K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072O24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-147M09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-059K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435P03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-503A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124N10
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-072O24.T7 (MSMg01no072_o24.b1)	MSMg01-072O24.TJ (MSMg01no072_o24.g1)
ACC	AG296357	AG296358
length	689	706
length of high quality (start - end)	568 (48 - 615)	---
definition	CHROMAT_FILE: MSMg01no072_o24.b1 PHD_FILE: MSMg01no072_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:51 2005	CHROMAT_FILE: MSMg01no072_o24.g1 PHD_FILE: MSMg01no072_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:51 2005
singlet/doublet	singlet	---
BLAST hit	plural	no hit data
sequence	ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAATACGCGGAA TTCCACGTGGTGTGCCCTCCCTGAACCAGAAACCAAACAAGAAGATCCTG ATGTGGCTCGTGGGCCTCCAGAATGTGTTTTCCCACCAGCTGCCCAGAAT GCCCAAAGAGTACATCACACGGCTCGTCTTTGACCCGTAAGTTCAACTCA TTCTTCCTTAGTTCCTCTCCAGTCCAAGGACGAACTATTTATTTAGACAG TGACATTCAGCCCTTGGAATACAGCTGCCTTCTGTCCTACTGTTGATAGA GAGCCATAGTGATATAACTTTCGGGTCAAAATCACTAAGATTAATCTATC AACACTTTTTACACATTCTTATTAATAGACTGAAATTTTATAGCCACGAG AGCATAGAAATCCTAGGATGTCTTACTTCATAGCCCATACATTCTTGGCT TTGTTATATTAACTAGGTACCACTGTAGACCAAGTACCCATAGGTAAGGT TGCACCAAAGTTGTGTTGGATCTTCAGGAGAAGTACAGAGGACAGCTCAA TATCTGCTATGCCATATACTCTGTAAACCCTGGGAAAACCATTGGGATTT TGGATATGTTAACCTACAAAATCTATGGGTTTAAGGAAAAACTAAACAAA ACAACCAAGGATGAGGATGTAGTTCATCGTTAGAGGGCT	CCAAGAAAGCGAGAGGCCCGAGAGAGANGCCCCTTTTTCATTTCGAAGNN NANNGNNGGNNTTACCNNGACCCGCNGAGGAANNNGGAGAGGNNCAAAGG AAGGAAGGAAGAACCTTANCGCCCCACAACCGCCAGAGGAGCCCAACCAC AAACAAGAAGAGGAGGAAGGCACGCAACGGNAAGAGACGACCCCCGCGAA GGGGGCACGCAACGGGAAACACCGAGAGCACACCAAAAACGACCCACCGC TTTTTTGACNACCACGCAAACCGCGCACAGAACCGACCAAGCGAGACCCG ACACCACCCGAAGAACAGTTAATAGTAATCCGAAGAACNACACANAGCCC CAACCACGAAGATTATTCCCCCCCCGATCGTACAGAGAGGCGACAAGTGA GACGCGCCCAGACACGACGACACATCCACGGAGAAGTCACACACGCACAA AGCCTGAAAGAACACGAACACAAAACAGGTAGAACCGCCAAGAACCACAC GCAACAAGCACCGGCCAACGAAAACACACAACCCCCCGCCCAGCACAACC CCAGCCCCACGGGACCCCCCAATGGACACACCACGAAACAGAAAAACACC GACCCCGACCCGCCCCCATCCAACCGCACGACACCCCACACCGCCGCGAA AAACAGCAACCCCTTCTCTTTTTTACAAGCCACCCCCACCCAGACCCCCC AAAAAG
quality values	Open. Hide. 9 9 12 10 10 10 10 19 15 28 23 19 11 12 15 22 20 30 32 30 24 33 36 37 27 22 10 10 10 22 21 21 11 9 9 9 16 11 8 8 8 8 8 8 11 12 14 22 22 28 31 31 36 36 36 36 36 59 41 27 14 11 11 11 11 15 16 34 37 57 57 68 57 57 42 36 41 41 41 42 54 54 48 48 48 48 48 43 43 43 43 48 43 47 47 50 50 50 50 50 48 51 51 51 51 48 57 43 57 43 57 57 57 57 57 57 50 50 50 50 50 50 50 48 46 46 46 48 50 68 68 51 51 50 50 50 50 57 57 57 57 54 52 52 57 52 50 50 50 50 50 50 50 68 68 57 57 50 50 50 50 50 50 57 57 57 57 68 68 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 52 57 52 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 57 57 45 45 45 57 57 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 52 52 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 52 45 43 43 43 39 31 43 44 62 62 62 62 62 62 62 62 62 43 43 39 35 35 43 43 52 52 52 62 62 52 52 62 43 43 39 43 43 62 62 52 52 52 62 62 62 62 52 52 52 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 43 31 31 35 35 32 36 19 26 43 43 43 52 52 57 57 57 57 57 57 57 52 52 57 59 59 57 57 57 59 59 59 43 43 39 43 59 59 59 59 59 59 59 57 57 52 52 52 57 59 43 43 57 57 57 57 52 52 52 57 57 57 54 54 52 57 57 54 50 50 43 52 52 52 43 43 35 43 43 38 38 50 50 44 47 43 43 43 43 43 48 47 47 43 32 32 20 20 27 32 32 35 32 32 24 36 21 18 14 30 30 47 47 42 40 25 25 25 36 36 43 43 46 46 44 57 44 32 41 23 20 27 23 30 23 36 30 39 36 43 43 43 43 46 42 43 43 43 43 42 30 30 16 24 30 39 39 43 47 48 59 59 43 39 39 39 39 47 48 48 40 40 39 39 30 37 34 32 22 32 37 37 32 29 25 17 19 16 14 19 32 39 39 46 39 39 36 36 37 37 37 36 39 39 37 37 37 37 37 37 39 32 26 22 27 28 18 18 11 10 10 10 10 13 20 19 22 16 16 19 24 24 27 26 28 22 22 20 22 24 14 18 19 15 10 10 10 10 10 10 13 12 17 16 16 14 11 10 9 8 10 10 10 10 10 12 16 12 11 16 10 10 10 10 10 10 21 28 28 26 13 13 14 18 21 21 19 19 16 16 16	Open. Hide. 8 8 8 8 8 9 8 8 7 7 6 6 7 13 8 8 8 7 7 8 11 6 6 6 8 8 3 0 3 8 6 6 6 8 6 6 6 6 6 6 6 6 6 6 6 6 6 3 0 0 0 3 0 0 3 0 0 3 3 0 0 3 6 6 6 3 0 0 3 6 6 6 7 9 3 0 3 9 11 23 23 3 0 0 0 3 12 19 17 8 7 3 0 0 3 8 8 7 7 6 6 8 8 9 9 11 8 8 9 9 9 9 9 9 13 8 8 3 0 3 6 6 7 7 8 9 8 8 8 8 8 13 19 24 33 33 36 37 34 23 23 20 32 32 37 33 28 28 33 29 31 36 30 30 18 17 10 14 14 13 18 19 19 28 32 22 15 9 9 10 7 10 10 6 6 8 8 10 11 3 0 3 12 11 11 8 8 8 8 8 8 8 13 10 12 10 13 13 19 15 20 20 20 18 13 13 9 9 9 9 10 11 11 11 17 16 24 21 25 17 16 13 12 12 12 22 23 31 24 19 12 12 12 12 22 11 12 10 8 8 6 6 8 6 8 10 15 13 12 12 9 12 10 11 10 11 13 16 3 0 3 23 18 11 11 11 15 21 15 15 8 8 8 8 8 8 10 10 10 10 10 10 13 13 17 17 17 22 16 16 10 11 17 17 18 20 23 12 9 9 10 10 11 11 11 8 8 8 8 10 13 19 14 14 19 13 9 9 9 9 8 8 7 6 6 6 6 6 6 8 8 8 8 6 6 6 8 3 0 3 17 18 10 3 0 3 9 9 10 10 13 17 10 10 10 10 9 10 11 9 9 12 6 6 6 7 10 7 19 20 21 19 11 11 8 6 6 6 6 6 6 10 11 12 12 21 24 12 10 10 13 8 8 8 13 11 10 8 8 7 7 10 8 8 8 10 10 8 10 10 10 10 10 8 8 6 6 6 6 8 8 10 8 8 8 10 8 8 8 8 10 8 11 17 12 8 8 8 11 10 8 10 10 10 10 10 10 11 11 8 8 8 8 8 8 12 16 12 11 11 10 10 8 8 8 8 8 9 9 14 19 10 8 11 11 11 10 9 8 8 8 8 8 10 10 12 10 10 10 9 19 12 12 11 10 8 8 8 8 8 9 16 12 12 12 12 10 10 8 7 7 7 7 10 8 12 8 11 7 6 8 8 10 8 8 8 11 11 9 9 10 8 11 11 11 8 8 8 8 8 8 8 13 11 8 8 8 8 8 8 8 6 6 8 12 11 12 9 9 13 8 8 8 8 8 8 15 12 12 8 8 8 7 7 7 8 10 7 9 8 8 8 10 8 8 8 8 9 9 9 10 15 17 16 12 11 8 10 8 10 10 10 9 8 8 6 6 6 6 10 8 6 6 8 8 10 10 9 9 10 10 10 10 10 10 10 8 8 8 8 8 8 10 8 8 8 8 8 8 11 8 8 6 6 8 8 11 11 10 12 8 8 8 10 8 8 8 10 8 6 6 6 9 6 6 6 6 7 7 6 6 8 8 8 8 6 6 8 10 10 9 9 10 15 16 14 10 10 8 7 6 6 8 8 8 10 11 10 10 9 8 8 8 10 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no072_o24.b1 MSMg01no072_o24.b1 CHROMAT_FILE:
MSMg01no072_o24.b1 PHD_FILE: MSMg01no072_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:51 2005
         (568 letters)



>mm_chr17_53792216_53793182
          Length = 967

 Score = 1011 bits (523), Expect = 0.0
 Identities = 557/569 (97%), Gaps = 3/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattccacgtggtgtgcc-ctccctgaaccagaaaccaaacaagaagatcctgatgtgg 59
           ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccacgtggtgggcaactccctgaaccagaaaccaaacaagaagatcctgatgtgg 260

                                                                       
Query: 60  ctcgtgggcctccagaatgtgttttcccaccagctgcccagaatgcccaaagagtacatc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcgtgggcctccagaatgtgttttcccaccagctgcccagaatgcccaaagagtacatc 320

                                                                       
Query: 120 acacggctcgtctttgacccgtaagttcaactcattcttccttagttcctctccagtcca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacggctcgtctttgacccgtaagttcaactcattcttccttagttcctctccagtcca 380

                                                                       
Query: 180 aggacgaactatttatttagacagtgacattcagcccttggaatacagctgccttctgtc 239
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aggacgaactgtttatttagacagtgacattcagcccttggaatatagctgccttctgtc 440

                                                                       
Query: 240 ctactgttgatagagagccatagtgatataactttcgggtcaaaatcactaagattaatc 299
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactgttgatagagagccatactgatataactttcgggtcaaaatcactaagattaatc 500

                                                                       
Query: 300 tatcaacactttttacacattcttattaatagactgaaattttatagccacgagagcata 359
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcaacactttttaca--ttcttattaatagactgaaattttatagccacgagagcata 558

                                                                       
Query: 360 gaaatcctaggatgtcttacttcatagcccatacattcttggctttgttatattaactag 419
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaaatcctagggtgtcttacttcatagcccatacattcttggctttgttatattaactag 618

                                                                       
Query: 420 gtaccactgtagaccaagtacccataggtaaggttgcaccaaagttgtgttggatcttca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtaccactgtagaccaagtacccataggtaaggttgcaccaaagttgtgttggatcttca 678

                                                                       
Query: 480 ggagaagtacagaggacagctcaatatctgctatgccatatactctgtaaaccctgggaa 539
           |||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct: 679 ggagaagtacagaggacagcaccatatctgctatgccatatactctgtaaaccttgggaa 738

                                        
Query: 540 aaccattgggattttggatatgttaacct 568
           |||||||||||||||||||||||||||||
Sbjct: 739 aaccattgggattttggatatgttaacct 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space:   534006
Effective search space used:   534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information