BAC Information

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BAC

Clone NameMSMg01-073B06
Chromosome17 (Build37)
Map Location 59,859,162 - 59,859,458
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B06.T7 (MSMg01no073_b06.b1)MSMg01-073B06.TJ (MSMg01no073_b06.g1)
ACCAG296465AG296466
length700715
length of high quality
(start - end)
545 (47 - 591)297 (75 - 371)
definitionCHROMAT_FILE: MSMg01no073_b06.b1 PHD_FILE: MSMg01no073_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005CHROMAT_FILE: MSMg01no073_b06.g1 PHD_FILE: MSMg01no073_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCCCAACATGATAGACACAGATAGCCGTGCTGTAGATCAGTAA
TAGTGTTAGGCCTTTGGACATCCCCTTGAGCTGGATAACAATATGAGTCC
TTCCTATCATAGTTCTTTGTCCCATTCCTCCTCTTCCATTTTCATAGAGG
ATCCCACCCCCCACCAAAAACTACACAGGCACACTGCCACGGTTCCCCAC
TCCCTGGGGCCTCAAGTCTCTCAAGGTTTAGGTGCATCTTCTCTCACTGA
GGCCAGACCAGACAGTCCTTTGCTGTATATGTGTCAGGGGCCTCCTATCA
GCTGGTATATGCTGCCTGGTTGGTGGGTTGGTGGCTCAGTGTCTGAGAGA
TCTCGGGGGTCAAGGTGAGCTGATATTGCTAGTCTTCCTATGGGTTCAGC
CTCCTCCAAAACTTCTTCCAATGCATTTTCTTTCTTTTTTATTTTCAGGC
CTCAACAACTTTATTTTTTCTGCTAGCCTTGTTATACTACCTAAGACAGA
GTTCTCTATCTAAGAAAAAAATTACCTAATAGTCACAAGTCACCTAATAG
TCATATTCTCTACAAGCAATCGCCACTAAAAACATATTCTTTAAAACCCA
GATTATAATTATTACTCCCATGAATATTACCAGATTATCAATTATGTATT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGTAACAAAATGTTTAGGGCATGA
TATTACCTTAATATTGGCTTTGTTAATCTTTATTTCCTTCAATCTACTTA
ATATTTCGATAAATACTAAGTTGCGAAATTATTAGAATAAATTTTTTCAA
ATATAGTGAAATGTGTATTAAATAATGGTTTGCTAAAATTGGTAAACACG
AATAATTTAATTTTTGACATAATTAAGCAGAAGGTCTGAAGTTGTGTGGC
AGGAAAACTGGTTTGGATCTGGAAGGAATACAGAAGGGGAGAAGGTGTGT
ATGGCGGTGGACACTCTCTTACAAGCAGGCATAGAGGAGGAATGGGATTT
GGAACTGGGGGGCAGGCCCACAACGTCTCCACTCTCCCTTCCTTTTCTTT
TCCCCTTCCCCTCCTCCTCTCTCTTTTCCTTCTTTTCCTTCACTCCATTA
CTTTCTACACTTTCTCTTCTCTCATCCCTTCTCTTTTTACCCTTTTTCCT
TCTCTCCTTCCTAACCTCATTTACCTTTTCCTTCTACCTCCCCTTTCATT
CTTTCTCCCTTTCCTTCCCCTCTTCCTTCCCTTTCTTCTCCTTTCCTTCC
CTTCTCTTTCTTCCACTCCCCCTTTTTTTTCTTTCTCCCGCTTCTTTCCT
CCCCTTTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b06.g1 MSMg01no073_b06.g1 CHROMAT_FILE:
MSMg01no073_b06.g1 PHD_FILE: MSMg01no073_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:02 2005
         (297 letters)



>mm_chr17_59858962_59859658
          Length = 697

 Score =  505 bits (261), Expect = e-147
 Identities = 288/297 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtaacaaaatgtttagggcatgatattaccttaatattggctttgttaatctttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaggtaacaaaatgtttagggcatgatattaccttaatattggctttgttaatctttatt 438

                                                                       
Query: 61  tccttcaatctacttaatatttcgataaatactaagttgcgaaattattagaataaattt 120
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 437 tccttcaatctacttaatattttgataaatactaagttgcaaaattattagaataaattt 378

                                                                       
Query: 121 tttcaaatatagtgaaatgtgtattaaataatggtttgctaaaattggtaaacacgaata 180
           |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttcaattatagttaaaagtgtattaaataatggtttgctaaaattggtaaacacgaata 318

                                                                       
Query: 181 atttaatttttgacataattaagcagaaggtctgaagttgtgtggcaggaaaactggttt 240
           ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 317 attgaatttttgacataattaagcagaaggtatgaaattgtgtggcaggaaaactggttt 258

                                                                    
Query: 241 ggatctggaaggaatacagaaggggagaaggtgtgtatggcggtggacactctctta 297
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggatctgggaggaatacagaaggggagaaggtgtgtatggcggtggacactctctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)