BAC Information

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BAC

Clone NameMSMg01-073D04
Chromosome17 (Build37)
Map Location 85,900,461 - 85,900,767
singlet/doubletsinglet
Overlap genenone
Upstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850
Downstream geneLOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073D04.T7 (MSMg01no073_d04.b1)MSMg01-073D04.TJ (MSMg01no073_d04.g1)
ACCAG296556AG296557
length680765
length of high quality
(start - end)
315 (50 - 364)172 (137 - 308)
definitionCHROMAT_FILE: MSMg01no073_d04.b1 PHD_FILE: MSMg01no073_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:11 2005CHROMAT_FILE: MSMg01no073_d04.g1 PHD_FILE: MSMg01no073_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGCTAAGCGTTCTATAGCTACACTAACTGTAGATTTGGCC
TAGGAGGAGGAGGAAGCCAAAGCTAACATTAAGTGCACCCTTAAATGTTA
TGTGTCTCGGGGCTCTTGCTTTCTTTCCTGTTTTCAGGCTTCCATGAGGT
GAACAGACTCCTCTTCTGTGTTCTCATCATGCACGGTATTTTGTCTTACC
CCAGGCCGAAAGCAGTGGAGCTAGCTCATCACTGACGGAGACCTCTGAAG
CCGTGAGCCCCAGCCAAACTATCTTCTTTCAAATTACTTTTTTTTTCTAG
TATGTTGTCGTATTATTCAACAGCCGCATAAAGTAGCCAAAGATGACTGA
TTCCAAGGAAAGAGCTTGTAGTCAACGTGTTAGCCTCTGCTTGGTGTGGA
ATCCATCTTGGACTGGACTCTGCCCAACATATTCTAGGTTCCTCTTCTTC
TTTAACCTTCCTGAATGATCTATCCTGCGCCTACAGAAAATTTTCTTCAT
ACTTCCCTAACCTGTACCTTCTATTCCACTGTCTCTTCCCCCACTCCCCT
TTTTTGTCGACTGCTTGTCGCTTCTTTTCCATCCTATGCCTCTCCCACTC
CTTTATTTGGAATGCTTTTCCCCCATTTTC
TTTTTTTTTTTTTTTTCTCTCTTCTTTTTTCTCTTTTTNCCTNNCCCNNT
ATGTANNNNCCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATCTCTG
TTCCCCATTTTTTTTAAGATTATTTATTTATTATATGTAAGTAAGTACAC
TGTAGCTGTCTTCAGACACTCCAGAAGAGGGGGTCAGATCTTGTTACAGA
TGGTTGTGAACCACCATGTAGTTGCTGGGATTTGAACTCTGGACCTTCGG
AAGAACAGTCGGTTGTTCTTAACCTCTGAGCCATCTCATCAGCCCTGTTC
CCCATTTTTTAAATAGGCTTATTTGTTTCTCTGGAGCCTAACTTTTTGAG
TTCTTTGCATGTATTGTATATTTATCCTCCCTCGCCCACGCTTCACTGAT
CTCCATTTCTTCAGTACAATTCCGGTTCCTGATAATATAAGTTTCTTTTG
CCGTTTACTTGAACCCCTTGACTTCATTCAATCCTTGACGACCATTCGTT
CTCGCGTTTCTTGTACCCTCCCACATGCCATGTTTCCCGTTTGCCGTGCG
CTCTCCTTTTCCTGGTTGTTGTTTCACAATTCCTCCCCTTTGCTTTCTTT
CTCGGTTACCTTCCCTCTTCCTTTGTGTTCTTCTCCCTTTCCTTCCACAA
TCTTTCCTGCCGCTCCCGCTATTCGTTTTTCTAGCCGCTTGCTTCCATCA
CTCTTTCCCTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_d04.b1 MSMg01no073_d04.b1 CHROMAT_FILE:
MSMg01no073_d04.b1 PHD_FILE: MSMg01no073_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:11 2005
         (315 letters)



>mm_chr17_85900257_85900971
          Length = 715

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%), Gaps = 2/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgctaagcgttctatagctacactaactgtagatttggcctaggaggaggagg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgctaagtgttctatagctacactaactgtagatttggcctaggaggaggagg 264

                                                                       
Query: 65  aagccaaagctaacattaagtgcacccttaaatgttatgtgtctcggggctcttgctttc 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 aagccaaagctaacattaagtgcacccttaaatgttatgtgtctcggg-ctcttgctttc 323

                                                                       
Query: 125 tttcctgttttcaggcttccatgaggtgaacagactcctcttctgtgttctcatcatgca 184
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 324 tttcctgttttcaggcttccatgaggtgaacagactcctcttttgtgttctcatcacgca 383

                                                                       
Query: 185 cggtattttgtcttaccccaggccgaaagcagtggagctagctcatcactgacggagacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cggtattttgtcttaccccaggccgaaagcagtggagctagctcatcactgacggagacc 443

                                                                       
Query: 245 tctgaagccgtgagccccagccaaactatcttctttcaaattacttttttttt-ctagta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 tctgaagccgtgagccccagccaaactatcttctttcaaattacttttttttttctagta 503

                   
Query: 304 tgttgtcg 311
           ||||||||
Sbjct: 504 tgttgtcg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)