BAC Information

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BAC

Clone NameMSMg01-073I19
Chromosome17 (Build37)
Map Location 53,023,034 - 53,023,347
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073I19.T7 (MSMg01no073_i19.b1)MSMg01-073I19.TJ (MSMg01no073_i19.g1)
ACCAG296821AG296822
length715663
length of high quality
(start - end)
318 (45 - 362)244 (84 - 327)
definitionCHROMAT_FILE: MSMg01no073_i19.b1 PHD_FILE: MSMg01no073_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:38 2005CHROMAT_FILE: MSMg01no073_i19.g1 PHD_FILE: MSMg01no073_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCATGTTTCTAACATGTGACATGGATAATTCATTATCTGTACAAA
TAACTGTAAATTGAACTGCAGTGTATGTATGTCCTTATCAGAAGACATTG
CCAAGAGCTTGAACAATAAACTGCAAGAATTAAGGTATTTGCAAACATTT
ATTATGCAAAAGGGTGCTTTCTGGTATGTTTTTAAAAGGTAGGGGAAAAC
TGAGAACCCTCTAAAGCACATTTGAAAAACTCCTTCAAGAAAAGATTTTT
CAATATTTGAATATACAATAGGCATACTAAACCACTGCTCAGTGCCATTC
ATGTAGATATAATCTTTTTTCCACCCCCCCACCCCATGTTGTACTCTGGG
TAACTGCATGCTTGAATACACGGGAGACATAAGATCTTTGAGATGGTCTA
TGCTTTGGCCTCTCTGTCCTGTTAAGGGCATTTCTATCCAGTATAAGCAA
TAATGTTATCAATATCCATCAAACATACATACACCTGTACTCAGTGATCC
AGTGATTTCCCTCCTTGTATATAGCCAGTAAAAGTGTGAGTATATGTATT
TGTGACTGGTAATGCATTGTGTATAAGCATGTGCATGTTTATGCGTGTGC
ATGTGTACACCTTGCCTCTTGTTTTCCTGTTGCTTTAATACTTGATCTTC
CCTTCCATTTCTTTG
TTAGATATTATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTCCTCATTCTTT
GGTCCCTTTCTGGGAATCCGAAACGTCTCACCTCTGTCTATCTGCTCAGC
TATTGGACATTGGTAACTTTATTGACCAGTCAAAAACCAACTGGGGACAG
GATTCCTTTAGTGCTATGTGTAGGACACTGCAAACAGGTTTTGGGTAACA
TAATTAGCATAAGAACACAGATTGCTACATTTATCTTCAGGCCTTTAGAA
TTTCATTTTCTTGTTGATGAATACCACAGCAGCCTCTGGGAAACTTATAT
GACTTCCAAATCCAGTGATACACTTGTCNTTTGCCACCTGCTGAAAGTAT
GTTACTTTTTTTCCCATTTTGGCCTATTAAAATTAAGGTTTAAAACCCAT
TTAAGGGAAGCAACAATAACTTCCCCATAATGGGGGTTAAGAATCCAAGA
TAAGGACGACTGATTTCCCGGATTTTTTTGTTGGAAAAATATTGGCTATT
CCTTTAATTTTGGAAAAATTTTTTCTTTTTCACAAAAATTAAAGAGGGGT
CGGGGAAACCCAGGGGTTTTTAAAAACGGTTTGGCCCGGGAAAAAAAAAA
AAAAAATTTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_i19.b1 MSMg01no073_i19.b1 CHROMAT_FILE:
MSMg01no073_i19.b1 PHD_FILE: MSMg01no073_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:38 2005
         (318 letters)



>mm_chr17_53022830_53023547
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcatgtttctaacatgtgacatggataattcattatctgtacaaataactgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcatgtttctaacatgtgacatggataattcattatctgtacaaataactgta 264

                                                                       
Query: 65  aattgaactgcagtgtatgtatgtccttatcagaagacattgccaagagcttgaacaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 aattgaactgcagtgtatgtatgtccttatcagaagacattgccaagagcttgaacagta 324

                                                                       
Query: 125 aactgcaagaattaaggtatttgcaaacatttattatgcaaaagggtgctttctggtatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactgcaagaattaaggtatttgcaaacatttattatgcaaaagggtgctttctggtatg 384

                                                                       
Query: 185 tttttaaaaggtaggggaaaactgagaaccctctaaagcacatttgaaaaactccttcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tttttaaaaggtaggggaaaactgagaaccctctaaagcacattttaaaaactccttcaa 444

                                                                       
Query: 245 gaaaagatttttcaatatttgaatatacaataggcatactaaaccactgctcagtgccat 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 gaaaagatttttcaatatttgaatatacaataggcatacaaaaccactgctcagtgccat 504

                         
Query: 305 tcatgtagatataa 318
           ||||||||||||||
Sbjct: 505 tcatgtagatataa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)