BAC Information

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BAC

Clone NameMSMg01-074D21
Chromosome17 (Build37)
Map Location 83,341,920 - 83,342,400
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074D21.T7 (MSMg01no074_d21.b1)MSMg01-074D21.TJ (MSMg01no074_d21.g1)
ACCAG297344AG297345
length696679
length of high quality
(start - end)
318 (44 - 361)484 (58 - 541)
definitionCHROMAT_FILE: MSMg01no074_d21.b1 PHD_FILE: MSMg01no074_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:33 2005CHROMAT_FILE: MSMg01no074_d21.g1 PHD_FILE: MSMg01no074_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCCCTATATATATTGGATATTAGTCCCCTAT
CCCATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAG
GTCCCATTTATTGATTCTCGATCTTACAGCCCAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTCCCCTACTTTC
TCCTCTATGTGTTTCTGTCCCCCCGCCCCCATGTGTAGTTCCTTAATCCA
CTTAGATTTGACCCCCCCCCCATTAGATAAAAATGGATCAATTCGCATTT
TTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAACATGCTG
TCTTTTTTCCACTGGATGCCGTTAGCTCCCTTGTCATATATTAAGTGCCC
CTACGAGCGCGCTTTCATCTCCGTGGCTTCACCTCTGTTGCCATGCTCCC
CATGTCTTTCCCCATATACCGTGCTACGATGATTTTATCATCAACACTCC
TATCCCATTCCTTCCCCCTCTTCCCTGCTCGATTCCCCCCCACCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTCACAATTTAAGAGGGTTTAAAGATGCTGAGAAAAGTTGGG
GGAACCAGGAGTAACTGAAGGTTGACTTAGAGACTCAAAGTTGTCTCAAT
ATCCAGGTCTTGGTTTAAGGTGCTAAGATTTAACATGGAATGGATAAACA
GACAATTACACGTTCTAGTTTAAAATATGACCCATGAGTACAGAGGGTAG
AGAGGGTTGGAGAAGACTCTATAGGTGAGCATTTGCGTGAGAAGACCTGA
GATCTTACTTTGCCTAAAGCTTAGGAGTCTTTGAGATTACTGAATAGACA
GCTTATTATGGGCTGTAATACAGGTTCACTAACTCTTGGATAGGATCACC
CAAGCAGGGTAGTATGCCTCATTTTAAGAGTCTACCATCAAAAGCTTCAA
GCTCCTTCAGATGAGAGACACTGGGATGATTAGGGGCCAAGGCAACATCC
TGTATAAGGTTGAGTGAATCCTTAGTCAGAAAAAAAAAGACCCAAACTAA
AGAGAAACCACCATTTCTCATGTCTAGATTTCCACAGTGGAAGGAGGCAG
GCGCTGTGATTGAGATCAAGGACCACTGCGGTTGATAAAAATGCACTGCT
ATGAACTTGACTGAACGTGTGCAGACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_d21.g1 MSMg01no074_d21.g1 CHROMAT_FILE:
MSMg01no074_d21.g1 PHD_FILE: MSMg01no074_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:33 2005
         (484 letters)



>mm_chr17_83341720_83342603
          Length = 884

 Score =  841 bits (435), Expect = 0.0
 Identities = 471/483 (97%), Gaps = 4/483 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcacaatttaagagggtttaaagatgctgagaaaagttgggggaaccaggagtaactg 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 681 agtcacaatttaagagggtttaaagatgctgagaaaagttgggggaaggaggagtaactg 622

                                                                       
Query: 61  aaggttgacttagagactcaaagttgtctcaatatccaggtcttggtttaaggtgctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggttgacttagagactcaaagttgtctcaatatccaggtcttggtttaaggtgctaag 562

                                                                       
Query: 121 attt-aacatggaatggataaacagacaattacacgttctagtttaaaatatgacccatg 179
           |||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 atttgaa-atggaatggataaacagaccattacacgttctagtttaaaatatgacccatg 503

                                                                       
Query: 180 ag-tacagagggtagagagggttggagaagactctataggtgagcatttgcgtgagaaga 238
           || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 502 agct-cagagggtagagagggttggagaagactctataggtgagcatttgtgtgagaaga 444

                                                                       
Query: 239 cctgagatcttactttgcctaaagcttaggagtctttgagattactgaatagacagctta 298
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 tctgagatcttactttgcctaaagcttaggagtctttgagactactgaatagacagctta 384

                                                                       
Query: 299 ttatgggctgtaatacaggttcactaactcttggataggatcacccaagcagggtagtat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatgggctgtaatacaggttcactaactcttggataggatcacccaagcagggtagtat 324

                                                                       
Query: 359 gcctcattttaagagtctaccatcaaaagcttcaagctccttcagatgagagacactggg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 gcctcattttaagagtctaccatcaaaagcttcaagctccttcagatgaaagacactggg 264

                                                                       
Query: 419 atgattaggggccaaggcaacatcctgtataaggttgagtgaatccttagtcagaaaaaa 478
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgattatgggccaaggcaacatcctgtataaggttgagtgaatccttagtcagaaaaaa 204

              
Query: 479 aaa 481
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)