BAC Information

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BAC

Clone NameMSMg01-074L09
Chromosome17 (Build37)
Map Location 21,961,473 - 22,063,487
singlet/doubletdoublet
Overlap gene2610036F08Rik, LOC624960
Upstream geneV1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik
Downstream gene3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074L09.T7 (MSMg01no074_l09.b1)MSMg01-074L09.TJ (MSMg01no074_l09.g1)
ACCAG297701AG297702
length699676
length of high quality
(start - end)
577 (49 - 625)515 (56 - 570)
definitionCHROMAT_FILE: MSMg01no074_l09.b1 PHD_FILE: MSMg01no074_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:10 2005CHROMAT_FILE: MSMg01no074_l09.g1 PHD_FILE: MSMg01no074_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(22,062,915 - 22,063,487)(21,961,473 - 21,961,988)
sequence
TCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGAAGAGTGAGAGAAAATTCTCTACCAAGAACAAATGAAA
CTACTATTGCTTCAAGGTTGTCAGTGACAAAATTCACTGGACTGTGTCTT
TATGTGGCTCTTAACTCATATTAACACCAAGTGATTCAACTTCAATAACC
CTCAGAACAATGCTGCCCATGGGCAAATATTACAGACCATTGTGGTAGCC
TGTCCTGTTGTAGCTCATCACTCTATATATCACAAGGGATGCATTAGATT
TTATTTCTTTTTGTTAACTAATTTACAGAATGGTAATATCATATATATCT
GAGAACATTTCATCCTGAAACAAGATTCAATAACTGACAATTCTTAACAT
CATGGTTGGGTCCAGTCTTTAACACATATGAGATTATAAAGCTTTAATGA
GCTAGCCAGTGAACAATAGATCGGGTACATGTTGATGTACAGTTTACAAA
TTTCAAAATTGTGGAAAATCATTTTGAAATACTGAAACAAAAAGAGAAAA
TTGTCACAGCAAGGCAAACCATTATATTAGATTATTGATAATAAATTCAG
AAATACTCAGGATATTTGGACCCTGCACAAGGTGGTATATTATGAAACTA
TATCATTACATAATTTTCCCTGATTTTCAAAAATAAGGAATTACTCAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTCTAAATTGCATGAACACCTTTGTGGGGGAATATTGACCACT
GAAATGCACGTGAATGCATTTATAAGTAGAATATTACAATGCAGGACACA
CCTGTCTTTAAATGGATTGTCCATGTGCTAAATGTTCTAAGCCAGTGGTT
CTAGGCCTTTCTAATGCTGAAACCTTTTAATACAGTACAAGGAACTCATG
AATTAATATATGTACATGTGGTACGCCTATTTGTAGATTGACAGAGGAGT
GGCCTAGTCATAAAACTAGGTCAGGCAATGAATAAGTCCTGACAGAGTAT
CTCCAATAACAATGTCTGAGGACTGGACAGATTGAGCAATAAATTCTCCA
ATTCTTTTGAAAAAACTTATAATAATCTTAAACAGAGGATATTGCAGAAT
ATTCAGAATACTGAAAGAAAAGGGATGTTAGATAGTCATCACACACCTGA
CTTTATCTTGACTTAAAAAAAAAACAGATGGATAGGAAAATATTTATAAA
GGAAAAAAAGGATCATAGAGCAGTTGCTAGGTTTTTATATTGACCAAAAG
ATTCTCTCTAATGCATACAGAAGGGGAACGAGTTGATTTCCTGCCAACGA
TCTAAGACTGTTTAAAAACAAATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_l09.b1 MSMg01no074_l09.b1 CHROMAT_FILE:
MSMg01no074_l09.b1 PHD_FILE: MSMg01no074_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:10 2005
         (577 letters)



>mm_chr17_22062711_22063687
          Length = 977

 Score = 1054 bits (545), Expect = 0.0
 Identities = 566/573 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagaagagtgagagaaaattctctaccaagaacaaatgaaactactattgctt 64
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 777 gaattccaagaagagtgagagaaagttctctaccaagatcaaatgaaactactattgctt 718

                                                                       
Query: 65  caaggttgtcagtgacaaaattcactggactgtgtctttatgtggctcttaactcatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caaggttgtcagtgacaaaattcactggactgtgtctttatgtggctcttaactcatatt 658

                                                                       
Query: 125 aacaccaagtgattcaacttcaataaccctcagaacaatgctgcccatgggcaaatatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aacaccaagtgattcaacttcaataaccctcagaacaatgctgcccatgggcaaatatta 598

                                                                       
Query: 185 cagaccattgtggtagcctgtcctgttgtagctcatcactctatatatcacaagggatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cagaccattgtggtagcctgtcctgttgtagctcatcactctatatatcacaagggatgc 538

                                                                       
Query: 245 attagattttatttctttttgttaactaatttacagaatggtaatatcatatatatctga 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 537 attagattttatttctttttgttaactaatttacagaatggtaatatcctatatatctga 478

                                                                       
Query: 305 gaacatttcatcctgaaacaagattcaataactgacaattcttaacatcatggttgggtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaacatttcatcctgaaacaagattcaataactgacaattcttaacatcatggttgggtc 418

                                                                       
Query: 365 cagtctttaacacatatgagattataaagctttaatgagctagccagtgaacaatagatc 424
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cagtctttaaaatatatgagattataaagctttaatgagctagccagtgaacaatagatc 358

                                                                       
Query: 425 gggtacatgttgatgtacagtttacaaatttcaaaattgtggaaaatcattttgaaatac 484
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 357 gggtacatgttgatgtacagtttagaaatttcaaaattgtggaaaatcattttgaaatac 298

                                                                       
Query: 485 tgaaacaaaaagagaaaattgtcacagcaaggcaaaccattatattagattattgataat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgaaacaaaaagagaaaattgtcacagcaaggcaaaccattatattagattattgataat 238

                                            
Query: 545 aaattcagaaatactcaggatatttggaccctg 577
           |||||||||||||||||||| ||||||||||||
Sbjct: 237 aaattcagaaatactcaggaaatttggaccctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no074_l09.g1 MSMg01no074_l09.g1 CHROMAT_FILE:
MSMg01no074_l09.g1 PHD_FILE: MSMg01no074_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:10 2005
         (515 letters)



>mm_chr17_21961273_21962187
          Length = 915

 Score =  897 bits (464), Expect = 0.0
 Identities = 503/516 (97%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctaaattgcatgaacacctttgtgggggaatattgaccactgaaatgcacgtgaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 ttttctaaattgcatgaacacctttgtgggggaatattgaccactgaaatgcatatgaat 260

                                                                       
Query: 61  gcatttataagtagaatattacaatgcaggacacacctgtctttaaatggattgtccatg 120
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 261 gcatttataagaagaatattacaatgcaggacacagctgtctttaaatggaatgtccatg 320

                                                                       
Query: 121 tgctaaatgttctaagccagtggttctaggcctttctaatgctgaaaccttttaatacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctaaatgttctaagccagtggttctaggcctttctaatgctgaaaccttttaatacag 380

                                                                       
Query: 181 tacaaggaactcatgaattaatatatgtacatgtggtacgcctatttgtagattgacaga 240
           |||||||||||||| ||||||| ||||||||||||||| |||||| |||| |||||||||
Sbjct: 381 tacaaggaactcattaattaatgtatgtacatgtggtaggcctatctgtacattgacaga 440

                                                                       
Query: 241 ggagtggcctagtcataaaactaggtcaggcaatgaataagtcctgacagagtatctcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagtggcctagtcataaaactaggtcaggcaatgaataagtcctgacagagtatctcca 500

                                                                       
Query: 301 ataacaatgtctgaggactggacagattgagcaataaattctccaattcttttgaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ataacaatgtctgaggactggacagattgagcaataaattccccaattcttttgaaaaaa 560

                                                                       
Query: 361 cttataataatcttaaacagaggatattgcagaatattcagaatactgaaagaaaaggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttataataatcttaaacagaggatattgcagaatattcagaatactgaaagaaaaggga 620

                                                                       
Query: 421 tgttagatagtcatcacacacctgactttatcttgacttaaaaaaaaaa-cagatggata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 621 tgttagatagtcatcacacacctgactttatcttgacttaaaaaaaaaaacagatgaata 680

                                               
Query: 480 ggaaaatatttataaaggaaaaaaaggatcatagag 515
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaaatatttataaaggaaaaaaaggatcatagag 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)