Query= MSMg01no074_l09.b1 MSMg01no074_l09.b1 CHROMAT_FILE:
MSMg01no074_l09.b1 PHD_FILE: MSMg01no074_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:10 2005
(577 letters)
>mm_chr17_22062711_22063687
Length = 977
Score = 1054 bits (545), Expect = 0.0
Identities = 566/573 (98%)
Strand = Plus / Minus
Query: 5 gaattccaagaagagtgagagaaaattctctaccaagaacaaatgaaactactattgctt 64
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 777 gaattccaagaagagtgagagaaagttctctaccaagatcaaatgaaactactattgctt 718
Query: 65 caaggttgtcagtgacaaaattcactggactgtgtctttatgtggctcttaactcatatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caaggttgtcagtgacaaaattcactggactgtgtctttatgtggctcttaactcatatt 658
Query: 125 aacaccaagtgattcaacttcaataaccctcagaacaatgctgcccatgggcaaatatta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aacaccaagtgattcaacttcaataaccctcagaacaatgctgcccatgggcaaatatta 598
Query: 185 cagaccattgtggtagcctgtcctgttgtagctcatcactctatatatcacaagggatgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cagaccattgtggtagcctgtcctgttgtagctcatcactctatatatcacaagggatgc 538
Query: 245 attagattttatttctttttgttaactaatttacagaatggtaatatcatatatatctga 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 537 attagattttatttctttttgttaactaatttacagaatggtaatatcctatatatctga 478
Query: 305 gaacatttcatcctgaaacaagattcaataactgacaattcttaacatcatggttgggtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaacatttcatcctgaaacaagattcaataactgacaattcttaacatcatggttgggtc 418
Query: 365 cagtctttaacacatatgagattataaagctttaatgagctagccagtgaacaatagatc 424
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cagtctttaaaatatatgagattataaagctttaatgagctagccagtgaacaatagatc 358
Query: 425 gggtacatgttgatgtacagtttacaaatttcaaaattgtggaaaatcattttgaaatac 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 357 gggtacatgttgatgtacagtttagaaatttcaaaattgtggaaaatcattttgaaatac 298
Query: 485 tgaaacaaaaagagaaaattgtcacagcaaggcaaaccattatattagattattgataat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgaaacaaaaagagaaaattgtcacagcaaggcaaaccattatattagattattgataat 238
Query: 545 aaattcagaaatactcaggatatttggaccctg 577
|||||||||||||||||||| ||||||||||||
Sbjct: 237 aaattcagaaatactcaggaaatttggaccctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_l09.g1 MSMg01no074_l09.g1 CHROMAT_FILE:
MSMg01no074_l09.g1 PHD_FILE: MSMg01no074_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:10 2005
(515 letters)
>mm_chr17_21961273_21962187
Length = 915
Score = 897 bits (464), Expect = 0.0
Identities = 503/516 (97%), Gaps = 1/516 (0%)
Strand = Plus / Plus
Query: 1 ttttctaaattgcatgaacacctttgtgggggaatattgaccactgaaatgcacgtgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttttctaaattgcatgaacacctttgtgggggaatattgaccactgaaatgcatatgaat 260
Query: 61 gcatttataagtagaatattacaatgcaggacacacctgtctttaaatggattgtccatg 120
||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 261 gcatttataagaagaatattacaatgcaggacacagctgtctttaaatggaatgtccatg 320
Query: 121 tgctaaatgttctaagccagtggttctaggcctttctaatgctgaaaccttttaatacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctaaatgttctaagccagtggttctaggcctttctaatgctgaaaccttttaatacag 380
Query: 181 tacaaggaactcatgaattaatatatgtacatgtggtacgcctatttgtagattgacaga 240
|||||||||||||| ||||||| ||||||||||||||| |||||| |||| |||||||||
Sbjct: 381 tacaaggaactcattaattaatgtatgtacatgtggtaggcctatctgtacattgacaga 440
Query: 241 ggagtggcctagtcataaaactaggtcaggcaatgaataagtcctgacagagtatctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagtggcctagtcataaaactaggtcaggcaatgaataagtcctgacagagtatctcca 500
Query: 301 ataacaatgtctgaggactggacagattgagcaataaattctccaattcttttgaaaaaa 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ataacaatgtctgaggactggacagattgagcaataaattccccaattcttttgaaaaaa 560
Query: 361 cttataataatcttaaacagaggatattgcagaatattcagaatactgaaagaaaaggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttataataatcttaaacagaggatattgcagaatattcagaatactgaaagaaaaggga 620
Query: 421 tgttagatagtcatcacacacctgactttatcttgacttaaaaaaaaaa-cagatggata 479
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 621 tgttagatagtcatcacacacctgactttatcttgacttaaaaaaaaaaacagatgaata 680
Query: 480 ggaaaatatttataaaggaaaaaaaggatcatagag 515
||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaaatatttataaaggaaaaaaaggatcatagag 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|