Query= MSMg01no075_h03.b1 MSMg01no075_h03.b1 CHROMAT_FILE:
MSMg01no075_h03.b1 PHD_FILE: MSMg01no075_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:06 2005
(446 letters)
>mm_chr17_36365630_36366475
Length = 846
Score = 255 bits (132), Expect = 3e-72
Identities = 236/282 (83%), Gaps = 29/282 (10%)
Strand = Plus / Plus
Query: 39 aaatggggaatggactgtcagttcagactttcatcctgtccacattgagtgatcatggtg 98
|||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct: 239 aaatggggaatggactgtcagtccagacttccatcctgtccatattgagtgatcatggtg 298
Query: 99 gcctccactgtccctctggtaaagcagactccagctccctccttctccatactcagctgt 158
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 299 acctccactgtccctctggtaaagcagactcctgctccctccttctccatactcagctgt 358
Query: 159 ttctttaagagcttccttctctgggctaagccacagc-acctagccaggct----agtga 213
| |||||||||||||||||||||||| ||| | || |||||| ||||| ||||
Sbjct: 359 tactttaagagcttccttctctgggc---gcctc-gccacctagggaggctggctagtg- 413
Query: 214 gcatgcccctaacaaggtttagctct--gctga--ctggtgtgccacagcttct-ctgcc 268
|||||||||| ||||||||| || | | | |||||| ||||||||| || |||||
Sbjct: 414 ---tgcccctaactaggtttagcactaggtttaggctggtgcgccacagct-cttctgcc 469
Query: 269 cttgtccttccccctccccct--cccttcccccagcagacct 308
| || ||||||| || |||||||||| |||||||
Sbjct: 470 c-----ct---ccctccctctgtcccttcccccttcagacct 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_h03.g1 MSMg01no075_h03.g1 CHROMAT_FILE:
MSMg01no075_h03.g1 PHD_FILE: MSMg01no075_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:06 2005
(554 letters)
>mm_chr17_36559499_36560452
Length = 954
Score = 839 bits (434), Expect = 0.0
Identities = 482/498 (96%), Gaps = 2/498 (0%)
Strand = Plus / Minus
Query: 58 attttacatttttaaggtttttaaaattatttattatttatttaatgtagatgtgtatac 117
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 954 attttacatttttaaggtttttttaattatttattacttatttaatgtagatgtgtacac 895
Query: 118 tctagctgtcttcagacacaccagaaaaagagggcattgggtcccattacagatgatggt 177
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 894 tctagttgtcttcagacacaccagaaaaagagggtattgggtcccattacagatgatggt 835
Query: 178 gagccatgatgtggaattgaacccaggacttctggaatagcagtcggtgctcttaactgt 237
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 834 gagccatgatgtggaattgaacccaggacttctagaatagcagttggtgctcttaactgt 775
Query: 238 tgagctatctctccaggcctatttcatttacttttaaaagggagaatgttgtta-agttc 296
| |||||||||||||| || ||||||||||||||||||| |||||||||||||| | |||
Sbjct: 774 taagctatctctccagccccatttcatttacttttaaaaaggagaatgttgttaca-ttc 716
Query: 297 agaagtctttccttgttcatacttgtaagtaaacattatcaaatctcatttactaatatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agaagtctttccttgttcatacttgtaagtaaacattatcaaatctcatttactaatatt 656
Query: 357 acctcaaatttttctagaggaatctgtaagcatttgacttggttaaggttatggtcatgg 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 acttcaaatttttctagaggaatctgtaagcatttgacttggttaaggttatggtcatgg 596
Query: 417 attcaaactggaaatgttctcctgagagcttagtgtttatcactgctgtagtgggctgca 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 595 attcaaactggaaatgttctcctgagagcttagtgtttatcattgctgtagtgggctgca 536
Query: 477 gaagggttaaaaaagggacactttatattatagtagaaatatcatagggttcttaaatat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaagggttaaaaaagggacactttatattatagtagaaatatcatagggttcttaaatat 476
Query: 537 gttgcaaatacctacttg 554
||||||||||||||||||
Sbjct: 475 gttgcaaatacctacttg 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
