Query= MSMg01no075_i14.b1 MSMg01no075_i14.b1 CHROMAT_FILE:
MSMg01no075_i14.b1 PHD_FILE: MSMg01no075_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:13 2005
(297 letters)
>mm_chr17_43509686_43510382
Length = 697
Score = 551 bits (285), Expect = e-161
Identities = 294/297 (98%)
Strand = Plus / Minus
Query: 1 ctgttctcgaatccagctttgccttttcctatgccttacccatcccacccagttttactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctgttctcgaatccagctttgccttttcctatgccttacccatcccacccagttttactg 438
Query: 61 agacacaattgagaagaattaaagttacttatgctgtatgaaatgatgatgttatacgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agacacaattgagaagaattaaagttacttatgctgtatgaaatgatgatgttatacgta 378
Query: 121 aatgccttgtattttatacataaatgcctgaaaaccatctctgttgtgctgctgccttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatgccttgtattttatacataaatgcctgaaaaccatctctgttgtgctgctgccttcc 318
Query: 181 ctcatccttcatgggccagctcaaggtcattactgcagggaccctccccagccgtgtgca 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcatccttcatgggccagttcaaggtcattactgcagggaccctccccagccgtgtgca 258
Query: 241 caccccttctttcttctgtctgaggagctagacctccttacaaagatctattcttag 297
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 257 caccccttcttccttctgtctgaggagctagacctccttacaaaaatctattcttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_i14.g1 MSMg01no075_i14.g1 CHROMAT_FILE:
MSMg01no075_i14.g1 PHD_FILE: MSMg01no075_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:13 2005
(562 letters)
>mm_chr17_43352496_43353454
Length = 959
Score = 990 bits (512), Expect = 0.0
Identities = 547/560 (97%), Gaps = 3/560 (0%)
Strand = Plus / Plus
Query: 1 agcatgggccatgtgagctcctatatcaaaaagacaaaaacaaccccaactgatagattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatgggccatgtgagctcctatatcaaaaagacaaaaacaaccccaactgatagattt 260
Query: 61 acaaccgtacccctgtactgcaggctcggggaacattgtagaagagggctcagaaagatt 120
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 acaaccctacccctgtactgcaggctcagggaacattgtagaagagggctcagaaagatt 320
Query: 121 gtaagagccagaagaccaggatgtctgctgtgaggtagtgtcttctatatatgacaggga 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagagccagaagaccaggatatctgctgtgaggtagtgtcttctatatatgacaggga 380
Query: 181 agctgcgcccatgaacggtcaacagtatggctgcctaaaaacctgaacaagctcatcacc 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgcacccatgaacggtcaacagtatggctgcctaaaaacctgaacaagctcatcacc 440
Query: 241 cattgacatgacatcatggatgagggaaatcttacaaggctccacccctagataaagaat 300
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattgacataacatcatagatgagggaaatcttacaaggctccacccctagataaagaat 500
Query: 301 tataggacatgatgagaaaagaagaatgtggcttcttcaaggataaccccctgatagttt 360
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tataggacatgatgagaaaaggagaatgtggcttcttcaaggataagcccctgatagttt 560
Query: 361 atccagtcactgatggtcagctctggacacatacacatatgggacacggtaaatgacctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccagtcactgatggtcagctctggacacatacacatatgggacacggtaaatgacctc 620
Query: 421 ggcagactagattaagtatacatatgtctggacaggaaagctggcttcattgacgacaca 480
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 agcagactagattaagtatacatatgtctggacaggaaagttggcttcattgacgacaca 680
Query: 481 gtaggctgttaggttctggaagcttctgaagaaggtcagcatacctctctgaatgctatc 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 gtaggctgttaggttctggaagcttctgaag---gtcagcatacctctctgaatgctatc 737
Query: 541 tattaactctcttaaggaaa 560
||||||||||||||||||||
Sbjct: 738 tattaactctcttaaggaaa 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 959
Length adjustment: 10
Effective length of query: 552
Effective length of database: 949
Effective search space: 523848
Effective search space used: 523848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
