BAC Information

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BAC

Clone NameMSMg01-076H09
Chromosome17 (Build37)
Map Location 71,988,019 - 72,063,296
singlet/doubletdoublet
Overlap geneWdr43, 4632412N22Rik
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451
Downstream geneBC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H09.T7 (MSMg01no076_h09.b1)MSMg01-076H09.TJ (MSMg01no076_h09.g1)
ACCAG299033AG299034
length708781
length of high quality
(start - end)
224 (44 - 267)120 (183 - 302)
definitionCHROMAT_FILE: MSMg01no076_h09.b1 PHD_FILE: MSMg01no076_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:26 2005CHROMAT_FILE: MSMg01no076_h09.g1 PHD_FILE: MSMg01no076_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,063,095 - 72,063,296)(71,988,019 - 71,988,138)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACGGTTTACCTGTTTCCAGACTCTTCACTTTCCTATTAATCATCTTC
CCTAACTATGTGATATTCTCCATATGTATCTTGTTTTCAAGATTTTCTAA
AATGTATGTGTATGCATGTTTGTCTAGGTATATGTGTGGTGTGCGGGTAC
TGCAGAGTCCAATACACAATGTCAGAACTCCTGGAGTTGTGGATGATCGT
ACGCTGTACGCTGTACGTACAAGGAGTGGAATTTGGCTTCCCTGGAAGAC
TTCTTGGATGTACCCTACCACAACCTACCTCAAAGCATAAACAAGACACT
AGTATCAGCTTTGGCCATAAACATTAGAGCAGCCATATGTCTCCTCACTG
GTAAAGTGCTCTTAACCACTAAGCCATCTCTCCAGCCCCCGTAAGTATCT
CCTTAATAAATACCCATTATAGCTATTACCCATTATATCCAATATCCATA
TAGCTCTATATCCCATTACAAGAATATTTAATATTCTGCTGCTCAGCTAT
CATAATTGTTCTTTTCTCCCCCTTTAGTTGGGACAGAAGTTTGTTGTAAG
GCATAGGTACAAGCCTTTTACTCTACCTGCTAATACCGTTGTTTGCTTTA
CTTTAATCTAGAAAAACCTCTTTCTTTTCCAACTCTCACTTTCACTACGT
ACTGGTCA
TTTTTTTTTNNNNNNNNCTTTTCTTTNCTTTCTTCTTCCTCCTCTATCCT
TTCCTCCGATGCTGTGGGTAGTCTGGCGGCCGCCTTTCTAAAAAGGGTAG
GTGAACTATAGAATTTCCCGAGGAATTCTTTTATTTTCCTTCACCCAAGA
GATACTGAGTGTTATTTTGGTATTTTGTCTAAGAAATCTGATGTTTTCTA
TATAACTAACTTTAAAGTAGTCCTAGTTTCCTGTTTCTACTGCATACTGG
TTTTGACTGAGGGTCAGCATGCAAATGACTCCGGTTGAATTCTGCCTTGT
TCCATATAATGCATTTCTTACCAGTATCCCTTGGTGTCATCCACTGTTTC
TCTATACACACACGGAATGCAATTGCCTTGACATCTCTTTTTTTACTACA
GAATATTCTGTCTAGACCTGCACGTTCTTGTTCTTGCCCAGTACTCGCTT
AACTTCTGACCTTTTTTCACCCTAATTCTCTCTTCTAAAGAATAATAGCT
ACTCTCTCCTTCCAAGATCTACCTATTCACCATATGTTAACTAATTTGCC
CCTTGTCTCCCCATCTTCTAGATTAGGTCTTTCATACCTTTGTTATCATG
ACTCTTCAATCCCCTTGTGCCTTGCTTGGTATCTCGTTCCCTTTTACTTT
TTTCCTCATTCTTTTCACTGCTTTCTACTTTCTGACTTTTTTCATATACT
TCTCTCTTTGTATTTTTTAAAATGGTTTATTCCCGTTACACTTCCGTCTC
GTGTTTGTTTCTTTATACCCTCCCCTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h09.b1 MSMg01no076_h09.b1 CHROMAT_FILE:
MSMg01no076_h09.b1 PHD_FILE: MSMg01no076_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:26 2005
         (224 letters)



>mm_chr17_72062875_72063498
          Length = 624

 Score =  383 bits (198), Expect = e-111
 Identities = 201/202 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  tgtttccagactcttcactttcctattaatcatcttccctaactatgtgatattctccat 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgtttccagactcttcactttcctattaatcatcttccctaactatgtgatattctccat 363

                                                                       
Query: 81  atgtatcttgttttcaagattttctaaaatgtatgtgtatgcatgtttgtctaggtatat 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atgtatcttgttttcaagattttctaaaatgtatgtgtatgcatgtttgtctaggtatat 303

                                                                       
Query: 141 gtgtggtgtgcgggtactgcagagtccaatacacaatgtcagaactcctggagttgtgga 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgtggtgtgcgggtactgcagagtccaatacacaatgtcagaactcctggagttgtgga 243

                                 
Query: 201 tgatcgtacgctgtacgctgta 222
           |||||||||||||||| |||||
Sbjct: 242 tgatcgtacgctgtacactgta 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no076_h09.g1 MSMg01no076_h09.g1 CHROMAT_FILE:
MSMg01no076_h09.g1 PHD_FILE: MSMg01no076_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:26 2005
         (120 letters)



>mm_chr17_71987819_71988338
          Length = 520

 Score =  224 bits (116), Expect = 1e-63
 Identities = 119/120 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatctgatgttttctatataactaactttaaagtagtcctagtttcctgtttctactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaatctgatgttttctatataactaactttaaagtagtcctagtttcctgtttctactg 260

                                                                       
Query: 61  catactggttttgactgagggtcagcatgcaaatgactccggttgaattctgccttgttc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 catactggttttgactgagggtcagcatgcaaatgactccagttgaattctgccttgttc 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)