BAC Information

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BAC

Clone NameMSMg01-076J13
Chromosome17 (Build37)
Map Location 63,202,562 - 63,328,352
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076J13.T7 (MSMg01no076_j13.b1)MSMg01-076J13.TJ (MSMg01no076_j13.g1)
ACCAG299135AG299136
length711827
length of high quality
(start - end)
329 (69 - 397)179 (129 - 307)
definitionCHROMAT_FILE: MSMg01no076_j13.b1 PHD_FILE: MSMg01no076_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:38 2005CHROMAT_FILE: MSMg01no076_j13.g1 PHD_FILE: MSMg01no076_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,328,024 - 63,328,352)(63,202,562 - 63,202,738)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATT
CAGGACCTCCCGAAGAGCAGCCGGACGTTTGCCGCTACCCTTCCCCAGTA
CCGCTGAACGGGTCAGTCATCTTGAAGTTCGTAATTCTAGTTTATTATGA
TCGAGTGGCTTACCTTTACTTTTAAAGTATCTTCAAATGAGAAAAGACGA
AGCTTAAGACAGAGTAATCAATCCCTCCTGATGATAGCCCACACAGCAGG
ATTCAGCTCCGCCTGGGCTATGCCTTGGGACTCTGCCTCAAATACTCCAA
AGACTGAAAACAATTCTAGATTACTTCCAGAACCAAAGGGAAGCCTTGCT
GTGGATGTCCAGTCCCGATGATTCTGTGCCTTTCAAGGTAAGCTGTGGTA
CTCTTGGTGGCTTTCAGAAGCTGGAATAGAGACAATGAACGCCACTCTAT
ATTTAATTGTGACTAATTGTATAATATACAAGATAAGGTGATAATTACTG
GGTAAAATAATAATAACTTCTATCTTAAGATTTAGTTTACATACTCACTA
CACCTTAGTTAATGCATGCCTTTTGGGGAAGGGCCCTGGGAAAAATCCTT
AAACTGCCACTCTTTTCTCTTTTACAAGTACTTTAGACACCCTGGTAACC
CCTGTGTTTGGTAAGCCAGCCTTCATGTTTTTCGTCATTCTTTTACCGTT
ACTTTGTAGTA
TTTTTTTTCCNTNTNNTCTTTTTCTTCCTTTTTTTTACCTCCTCTCCTCT
TTNCTCGATGAAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCTAAGCTGACAGTCCTTC
TGGTTCATCTTTGGAGCCTGTAGACTCCTTCTTCAGCATTCTGCCTTCCA
GAATGCATCCCATGGTGCTGTCTCAGCCTATCATCTGGGTCCTCAAAGGG
TCCATGATCACTCCTCCTCCCCCCAGTGCCATTGTCCTCAGAAGTGCCTT
TGCAGCGATGCCGGTATCAGGCCTTATTAAAACCCCCAAGGTACGTAATC
CCTGATTACCACTGACAGATCTCCAGCTGCTACCGCTTATGAAGAAGGCT
GGCCTGTGGTTTAGGCCAGGCCTCCCTCCCCTACTTTATTCTCACTCCTA
CATAATTTCCTCCTCCTTATCCCCCCCTTCCTTCTCTCATCCTTTTTTTT
CTTTCCTTTTTTTCCTCCCTTCCCTTTTCCTCCCCTCTTCTCCCTTATTT
TCCCTATTATTCCCCCTTTTCCCCCCCCTCCCCTCTTCCTTTTCTTTTTT
ATACCCTTAATCCTTCTTCTTCTTCCTCTTTTTCCCCTTTTCACCCCCCC
TCATCCTCCATTCCCCAATATTTCTTTTTCCTCCTTTCCTTTTCCCCCTC
TTTCCCCCTTTCTTCTTTTTTTCTCCCTTTTCTATCCCTTCTCCTATCTT
CTTTATTGTTCTCTCTGTCCCCCATTTACTCGTCCCCCCCCGTAATTATT
AATCTCCTACTTTGTCACCTGTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_j13.b1 MSMg01no076_j13.b1 CHROMAT_FILE:
MSMg01no076_j13.b1 PHD_FILE: MSMg01no076_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:38 2005
         (329 letters)



>mm_chr17_63327824_63328552
          Length = 729

 Score =  590 bits (305), Expect = e-173
 Identities = 323/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccggacgtttgccgctacccttccccagtaccgctgaacgggtcagtcatcttgaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agccggacgtttgccgctacccttccccagtaccgctgaacgggtcagtcatcttgaagt 470

                                                                       
Query: 61  tcgtaattctagtttattatgatcgagtggcttacctttacttttaaagtatcttcaaat 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 469 tcgtaattctagtttattatgatcgcgtggcttacctttacttttaaagtatcttcaaat 410

                                                                       
Query: 121 gagaaaagacgaagcttaagacagagtaatcaatccctcctgatgatagcccacacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 409 gagaaaagacgaagcttaagacagagtaatcaatccctcctgatgatagtccacacagca 350

                                                                       
Query: 181 ggattcagctccgcctgggctatgccttgggactctgcctcaaatactccaaagactgaa 240
           |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 349 ggattcagctccgcatgggttatgccttgggactctgcctcaaataccccaaagactgaa 290

                                                                       
Query: 241 aacaattctagattacttccagaaccaaagggaagccttgctgtggatgtccagtcccga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 289 aacaattctagattacttccagaaccaaagggaagccttgctgtggatgtccagtcccca 230

                                        
Query: 301 tgattctgtgcctttcaaggtaagctgtg 329
           |||||||||||||||||||||||||||||
Sbjct: 229 tgattctgtgcctttcaaggtaagctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_j13.g1 MSMg01no076_j13.g1 CHROMAT_FILE:
MSMg01no076_j13.g1 PHD_FILE: MSMg01no076_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:38 2005
         (179 letters)



>mm_chr17_63202362_63202940
          Length = 579

 Score =  311 bits (161), Expect = 1e-89
 Identities = 173/177 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctctaagctgacagtccttctggttcatctttggagcctgtagactccttcttcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctctaagctgacagtccttctggttcatctttggagcctgtagactccttcttcagca 260

                                                                       
Query: 61  ttctgccttccagaatgcatcccatggtgctgtctcagcctatcatctgggtcctcaaag 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgccttccagaatgcatcccagggtgctgtctcagcctatcatctgggtcctcaaag 320

                                                                    
Query: 121 ggtccatgatcactcctcctccccccagtgccattgtcctcagaagtgcctttgcag 177
           || ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcccatgatcactcccccaccccccagtgccattgtcctcagaagtgcctttgcag 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)