BAC Information

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BAC

Clone NameMSMg01-076M10
Chromosome17 (Build37)
Map Location 16,390,399 - 16,390,956
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076M10.T7 (MSMg01no076_m10.b1)MSMg01-076M10.TJ (MSMg01no076_m10.g1)
ACCAG299272AG299273
length698716
length of high quality
(start - end)		474 (44 - 517)558 (76 - 633)
definitionCHROMAT_FILE: MSMg01no076_m10.b1 PHD_FILE: MSMg01no076_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:52 2005CHROMAT_FILE: MSMg01no076_m10.g1 PHD_FILE: MSMg01no076_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGTCATAATTTGCGGCGCTAAACGACTCCTATATTCAGAGATCCGCGG
AATTCCATGAGCAAATCTTTGTTTAAGAAATAGAATGGGGGGAGGGCTCT
GCCAGAGCAGGTGGGGAAGCCATCTTGGGTCACGGATTCCCTGGAAGACT
AGTCTGCACAGGTAAGAGTGTGGACTACAGAAGCGACACAGCTTCTTGAA
CAGGCAGAAGCAACACAGCTTCTGGGACAGACCCCATTTCAGGCTGCAGA
CATCCTGGCAACATCCCCACTAGAGGAGAGGTGCCTGCCTGGGAGGGCTC
TGCCTGAGCAGGTGGGGGAGTCATCTTGGGTCCCAGATCCCTCAGAGACT
AGTCTGCACAGGTGAGAGTGTGGACTACAGAAACAACAGAGCTTCTTAGA
CAGGCAGACTAGACAAAGCTTCTGGGACAGGCCCTGTTTCGGCCCTTATC
TTTAGCCAGGAGGCAGGTCTGAATGCCAGATATCTGTGCACCTTCCCTGC
AAGAGGAGAGTTTGCTTATAGAGAGTACTCCGACCACTGAGACTCAGGAG
AGAGCTAGACTTCCAGGTCTGCTGACAGAGGCTAACAGACTCTCTAGATG
AACTAGCTCTCACCAGAGACAACTATAACTACTAAATCCAGAGAACCTGA
GATGGGCTAAGGCAAACGTACCATTCCTTTCCGCAGAACCCATACCAT

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTATAACTGCCACAGTAAATATC
ACCCTACCAAAAGTAAACTTTATTCTAATTTTTATACTCTTAATTAAACC
TGTTCCTGAAATCCATATAGATTTTTATCATCTATACTGATTCAGCTTGT
GTTTATTTATTTAAGATGCTTTATGTAATAGTAGCTTGGTTTTTAAAAAA
ATACTGTGTAGTATTCTGTTGTGAACATATCACAATTCCCTTTTTTCCAT
TGTACCTCTTCAAGATACGCCATGTTGGTTGCCCTCATATTTTGGATGTC
ACCAATAAGGCCTCTGTGAACACATTGTAAATGTCTTCTGTTGCACCATG
ACCCCACCCCATTCTTCATTCATAGATATATGAATGAAGTGGCATTATTG
AGCCACAGGACATGGGACAAATGACACTAGTAAGTCATGCCAAGCAGTTT
TCCAGTGACTGAACCACTTTAATTTCCATATTAGCCCCTTCACAACATTG
TGTGATTTGACTATTGAGTTGCATGTAGCTCTAGGATTTATGTTTTCAGT
GGGTATGTTGTGTATTAATATTTATTCGTGTCAATCCATTCTAATACTGA
AATGCATGTAGGTTTTGAGCCAGGATTGTAGCACACGGCCGTCTTTCCCT
TCTTGTTTCTGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_m10.g1 MSMg01no076_m10.g1 CHROMAT_FILE:
MSMg01no076_m10.g1 PHD_FILE: MSMg01no076_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:52 2005
         (558 letters)



>mm_chr17_16390199_16391156
          Length = 958

 Score = 1056 bits (546), Expect = 0.0
 Identities = 555/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttataactgccacagtaaatatcaccctaccaaaagtaaactttattctaatttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttataactgccacagtaaatatcaccctaccaaaagtaaactttattctaatttttat 260

                                                                       
Query: 61  actcttaattaaacctgttcctgaaatccatatagatttttatcatctatactgattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcttaattaaacctgttcctgaaatccatatagatttttatcatctatactgattcag 320

                                                                       
Query: 121 cttgtgtttatttatttaagatgctttatgtaatagtagcttggtttttaaaaaaatact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtgtttatttatttaagatgctttatgtaatagtagcttggtttttaaaaaaatact 380

                                                                       
Query: 181 gtgtagtattctgttgtgaacatatcacaattcccttttttccattgtacctcttcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtagtattctgttgtgaacatatcacaattcccttttttccattgtacctcttcaaga 440

                                                                       
Query: 241 tacgccatgttggttgccctcatattttggatgtcaccaataaggcctctgtgaacacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacgccatgttggttgccctcatattttggatgtcaccaataaggcctctgtgaacacat 500

                                                                       
Query: 301 tgtaaatgtcttctgttgcaccatgaccccaccccattcttcattcatagatatatgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaaatgtcttctgttgcaccatgaccccaccccattcttcattcatagatatatgaat 560

                                                                       
Query: 361 gaagtggcattattgagccacaggacatgggacaaatgacactagtaagtcatgccaagc 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 gaagtggcattattgagtcacaggacatgggacaaatgacactagtaagtcatgcaaagc 620

                                                                       
Query: 421 agttttccagtgactgaaccactttaatttccatattagccccttcacaacattgtgtga 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttttcagtgactgaaccactttaatttccatattagccccttcacaacattgtgtga 680

                                                                       
Query: 481 tttgactattgagttgcatgtagctctaggatttatgttttcagtgggtatgttgtgtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgactattgagttgcatgtagctctaggatttatgttttcagtgggtatgttgtgtat 740

                             
Query: 541 taatatttattcgtgtca 558
           ||||||||||||||||||
Sbjct: 741 taatatttattcgtgtca 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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