Query= MSMg01no078_o02.b1 MSMg01no078_o02.b1 CHROMAT_FILE:
MSMg01no078_o02.b1 PHD_FILE: MSMg01no078_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:20 2005
(511 letters)
>mm_chr17_82417879_82418789
Length = 911
Score = 878 bits (454), Expect = 0.0
Identities = 490/502 (97%)
Strand = Plus / Minus
Query: 10 gaattcaagataaattctgtgattcaacagaaagtgcctcatttcttacccagttgctga 69
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattcaagataatttctgtgattcaacagaaagtgcctcatttcttacccagttgctga 652
Query: 70 tctaacccctgtttaaaatgaaataaagtaagagaaaacagtaacaaaaactactcttaa 129
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 651 tctaacccctgtttaaaatgaaataaagtaagagaaaacaacaacaaaaactactcttaa 592
Query: 130 caggcagcttggtggcaacctcacattggttccctctaagtctctgcttctctttagagc 189
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 591 caggcagcttggtggcaacctcacattggtgccctctaagtctctgcttctctttagagc 532
Query: 190 ttggcttccaatcaatctaatctcccctttaagcttcctttcttataataaaagatcctc 249
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 531 ttggcttctaatcaatctaatctctcctttaagcttcctttcttataataaaagatcctc 472
Query: 250 taaaaagtcacactatgtttgtccttgaaactcattctttgagttatacatgcatggtgc 309
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 471 taaaaagtcacactatgtttgtccttgaaactcatcctttgagttatacatgcatggagc 412
Query: 310 ctgagacgggaactctgctaaagttttgttaactctcaagttagtcccacttgaaatgat 369
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 411 ctgagacgggaactctactaaagttttgttaactctcaagttaatcccacttgaaatgat 352
Query: 370 gtctcctccatactcaaggatatccattccccttctatggaagcatagtcttttaaaagc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtctcctccatactcaaggatatccattccccttctatggaagcatagtcttttaaaagc 292
Query: 430 atatcaaaaatattttgtttattgctactatttgggtggagcatttgtctctgttggtta 489
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 291 atatcaaaaatattttgtttattgttactatttgggtggagcattggtctctgttggtta 232
Query: 490 ccaaattcgttgtcctttggcc 511
||||||||||||||||||||||
Sbjct: 231 ccaaattcgttgtcctttggcc 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_o02.g1 MSMg01no078_o02.g1 CHROMAT_FILE:
MSMg01no078_o02.g1 PHD_FILE: MSMg01no078_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:20 2005
(422 letters)
>mm_chr17_82248054_82248875
Length = 822
Score = 789 bits (408), Expect = 0.0
Identities = 422/432 (97%), Gaps = 10/432 (2%)
Strand = Plus / Plus
Query: 1 cacacatataaaaaatatcttaatcattttatccttccctcctatcaataccctcctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cacacatataaaaaatatcttaatcattttatccttccctcctatcaataccctcctaga 250
Query: 61 ccctcttcctacttaatgctctctctctctctctctctctctctctctctctct-t---- 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 251 ccctcttcctacttaatgctctctctctctctctctctctctctctctctctctctctct 310
Query: 116 -----tctctctcagctaaatagtgctgccagtatttgaaccagttgggggctatctgct 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctctctctctctcagctaaatagtgctgccagtatttgaaccagttgggggctatctgct 370
Query: 171 ggagcttgggtaacattttaggaagtcatccccttgataggattttttgatcttaatatc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggagcttgggtaacattttaggaagtcatccccttgataggattttttgatcttaatatc 430
Query: 231 tcactgactgaggtatatagtcaggtttggaaaccctttcctgagctataataggcaaac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcactgactgaggtatatagtcaggtttggaaaccctttcctgagctataataggcaaac 490
Query: 291 agatgtaaaatcagtagaagagactaaagagaagaggatggggaagtgaagaaagagaga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agatgtaaaatcagtagaagagactaaagagaagaggatggggaagtgaagaaagagaga 550
Query: 351 agatgcagaaagaaagggggaagcatggcagaaagtaacctgcaaaaggacagaataaac 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agatgcagaaagaaagggggaagcatggcagaaagtaacctgcaaaaggacagaataaac 610
Query: 411 tttcgatggaaa 422
||||||||||||
Sbjct: 611 tttcgatggaaa 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
