BAC Information

Click to search

BAC

Clone NameMSMg01-078O13
Chromosome17 (Build37)
Map Location 65,930,015 - 65,930,261
singlet/doubletsinglet
Overlap geneVapa
Upstream geneMan2a1, 4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701
Downstream geneTxndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078O13.T7 (MSMg01no078_o13.b1)MSMg01-078O13.TJ (MSMg01no078_o13.g1)
ACCAG300128AG300129
length824716
length of high quality
(start - end)
---247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no078_o13.b1 PHD_FILE: MSMg01no078_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:22 2005CHROMAT_FILE: MSMg01no078_o13.g1 PHD_FILE: MSMg01no078_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATCACTTTCCCNTGTATCCTGGAGCAGAGCTGCTTACCACCCAGCAT
GCCCGAACATGAGAGACCGAGCCTGATACCGATTCTGAGACCGCTAGTGT
TCAGTGCAGGTAGAGAGAGTCCTTTTTTCCCTCTTTCTTTTCCCCTTTCC
TCCTCTCTCCCCCTTTCCTTTCTCCCTTTTTCTTTTCCCTTTTTTTCTCC
TCCCTCCTTCTTTCCCTTCCTTCTCTCTCTCCCTTTTTGCCTCTTTTTTT
TCCTTTCTCCCCCTTTTTTCTTTTCTCCCCCTCTTCTCCTTCTTTTCTTC
TCTTCTTCCTTTTTTTTCTTCCTTTTTTGCTTTCTCCCTTCCCTCCTTCC
CCTTTTTCCCTTTGTTCTTTCCTTTCTTTTTTCTTTTTTCCCTCTTCCCC
CCCTTTCTTTTTTTTCTTCTTTTCTCCTCTCCCTTTCTCTTTCTTCTCCC
TCCTCCCTCTCTCTTCCTCTCCTCTCCCTCCTCTCCCTCTCTTTTCCCCT
CTTCCCTCCTCTCTCTTTCTTTCTTTCTTCCTCCCTCTTCTCTTTTCCTT
TTCTTCCCCCCCTTTCCCCCCCCTTTCCCTCTCTTCTTTTTCTTCTTTTT
CTATTCCTCCTCCCTCTCTCTTTCCCCCCCCCCCTTCTTTTCTCTCCTTT
CTCCTCTCCCTTCTTTCTCTCTTCTCCGTTCCCCTCTTTCTCTTCTTCTC
CTTTTCTCTTCTCTCTCTCCCCTTTCTCTTCCCTTCTTTTCCTTTTTTTT
CACTTCCTCTCTCTTTTCTCCCTG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTATGAACTTTTAGCTCTGCTACT
CACCTGTGTGTGCTGTTTAAAAATCTTTGTTTTGTGTCTTTTCCCTAGGA
TGAAGGCCTAAGGCTCAGAAAGGTAGCACATTCGGATAAACCTGGATCCA
CCTCAGCCGTGTCCTTCAGAGATAATGTCACCAGTCCTCTTCCTTCTCTT
CTGGTTGTAATTGCAGCCATTTTCATTGGATTCTTTCTAGGGAAATTCAT
CTTGTAGAGCGAAGCATGCAGAGTGCTGCTTCTTTTTCTTTTTTCTCTCG
ACCAGAAAAAGATTTGTTCACCTACCACTTCATCGGTAGCATGGCCCGCG
TTGACCATGGCCCGCGCCGACCAATTTTTTTTGTGTGTACAGTGTCATAT
AGGCTTTGTCTTTAATGATCTCTTACGGTTAGAAAACACTATAAAAACCA
ACCGTTCGGCTACTGTACAAATTTGTATATTATCAGATCATCACTAGCAG
ATGTCAGTTGCCCATTCTGTCCTTCATGAACTTCTTATATACTGAATTGT
TCTCTCTTCGTGGTTCTTTTACCAGTCCCCCAATTGTTCACTCTTGCCAA
TGTTACTTTACTTTTCCCCCCCATATTTTACCTGCTGCCGTTCCTTCTTG
TACCATGATTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_o13.g1 MSMg01no078_o13.g1 CHROMAT_FILE:
MSMg01no078_o13.g1 PHD_FILE: MSMg01no078_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:23 2005
         (247 letters)



>mm_chr17_65929815_65930461
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttatgaacttttagctctgctactcacctgtgtgtgctgtttaaaaatctttgttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctttatgaacttttagctctgctactcacctgtgtgtgctgtttaaaaatctttgttttg 388

                                                                       
Query: 61  tgtcttttccctaggatgaaggcctaaggctcagaaaggtagcacattcggataaacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgtcttttccctaggatgaaggcctaaggctcagaaaggtagcacattcggataaacctg 328

                                                                       
Query: 121 gatccacctcagccgtgtccttcagagataatgtcaccagtcctcttccttctcttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gatccacctcagccgtgtccttcagagataatgtcaccagtcctcttccttctcttctgg 268

                                                                       
Query: 181 ttgtaattgcagccattttcattggattctttctagggaaattcatcttgtagagcgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 ttgtaattgcagccattttcattggattctttctagggaaattcatcttgtagagtgaag 208

                  
Query: 241 catgcag 247
           |||||||
Sbjct: 207 catgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)