Query= MSMg01no078_o21.b1 MSMg01no078_o21.b1 CHROMAT_FILE:
MSMg01no078_o21.b1 PHD_FILE: MSMg01no078_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:24 2005
(569 letters)
>mm_chr17_4362789_4363757
Length = 969
Score = 1027 bits (531), Expect = 0.0
Identities = 556/565 (98%), Gaps = 2/565 (0%)
Strand = Plus / Plus
Query: 5 gaattccaccaaaaatcctcgagaactggcaatgagattcctctatacctagattaggag 64
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccaaaaatcattgagaactggcaatgagattcctctatacctagattaggag 264
Query: 65 accccaaagagaaggtatgctttatcctagacaagttgagctgagaagtttctgggctta 124
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 accccaaagagaagatatgctttatcctagacaagttgagctgagaagtctctgggctta 324
Query: 125 aaggaagggctatatgggagaggcctagcaatccagcttgctgtttggctagccacccct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggaagggctatatgggagaggcctagcaatccagcttgctgtttggctagccacccct 384
Query: 185 cacattccaggtctctacccatgaggtcaggttagtatcctgctccttcttaccatgggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacattccaggtctctacccatgaggtcaggttagtatcctgctccttcttaccatgggt 444
Query: 245 tcaaaaggtaagttcctttgtgttatgtatgagaaaaagagggaaaagtgaaaataagat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaaaggtaagttcctttgtgttatgtatgagaaaaagagggaaaagtgaaaataagat 504
Query: 305 aaaatgtcaccagaagctccgcccagcattaaaggatgaaccatgtcatagaagcatgtt 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaatgtcaccagaagctccacccagcattaaaggatgaaccatgtcatagaagcatgtt 564
Query: 365 tagaagatatttccaacaaactataaatcctcagccaaacctcagactgaatattccaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagaagatatttccaacaaactataaatcctcagccaaacctcagactgaatattccaaa 624
Query: 425 cttcagactgaatattctactgatttgggggactacaggctaccctgtcatcactctaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcagactgaatattctactgatttgggggactacaggctaccctgtcatcactctaca 684
Query: 485 ctgtaaatcaatctctttcccctctcactctctctctctctctctctctctctctctctc 544
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 ctgtaaatcaaactctttcctctctc--tctctctctctctctctctctctctctctctc 742
Query: 545 tctctctctctgtgtgtgtgtgtgt 569
|||||||||||||||||||||||||
Sbjct: 743 tctctctctctgtgtgtgtgtgtgt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_o21.g1 MSMg01no078_o21.g1 CHROMAT_FILE:
MSMg01no078_o21.g1 PHD_FILE: MSMg01no078_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:24 2005
(498 letters)
>mm_chr17_4465659_4466556
Length = 898
Score = 940 bits (486), Expect = 0.0
Identities = 495/498 (99%)
Strand = Plus / Minus
Query: 1 ctgtgctcctcatgttgatttcgcctacactgatcattggtttgccatgaatgcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ctgtgctcctcatgttgatttcgcctacactgatcattggtttgccatgaatgcatccaa 639
Query: 61 tctatagtgactgatgagcagaggcatctttaccataaaacacaccggaccttaatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tctatagtgactgatgagcagaggcatctttaccataaaacacaccggaccttaatgaaa 579
Query: 121 atgtctggtggcttttgtgggactcaggcttgagcagatgtgtagagctaaggtgacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgtctggtggcttttgtgggactcaggcttgagcagatgtgtagagctaaggtgacagt 519
Query: 181 caaggtctagatattatttttagccttgaatagtcttgtagtctggccttcctcccatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caaggtctagatattatttttagccttgaatagtcttgtagtctggccttcctcccatta 459
Query: 241 gcttcctgagtggtctggtataaacccattttttatatctcccttgttcccgttttcttg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gcttcctgagtgggctggtataaacccattttttatatctcccttgttcccgttttcttg 399
Query: 301 tcagcagtattcaactagcagttaaaatttcagagaaaagtgtaggtagaacccagtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 398 tcagcagtattcaactagcagttaaaatttcagagaaaagtgtaggtagaacccagttgg 339
Query: 361 tacgaggttggaacgttccgagcctctggcttcctgtgtgtgccttttttcttctctcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tacgaggttggaacgttccgagcctctggcttcctgtgtgtgccttttttcttctctcta 279
Query: 421 tgcacatcttggctttctagtgattcaaactccgtctaaatgctgctacttacccacctg 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 278 tgcacatcttggctttctagtgattcaaactccgtctaaatgttgctacttacccacctg 219
Query: 481 tcaagcgtggtgtgagaa 498
||||||||||||||||||
Sbjct: 218 tcaagcgtggtgtgagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
