Query= MSMg01no079_d02.b1 MSMg01no079_d02.b1 CHROMAT_FILE:
MSMg01no079_d02.b1 PHD_FILE: MSMg01no079_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:45 2005
(646 letters)
>mm_chr17_89984108_89985153
Length = 1046
Score = 1120 bits (579), Expect = 0.0
Identities = 633/669 (94%), Gaps = 31/669 (4%)
Strand = Plus / Plus
Query: 5 ggaattcttcaccttttcttttttc-tgattc-aatatctggtttcttcatgctatcctg 62
||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 182 ggaattcttcaccttttcttttttcatgattcaaatatctggtttctccatgctatcctg 241
Query: 63 tatttcctataggttcctattctggctttaatttcttttgttttcttatgtcatccagat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tatttcctataggttcctattctggctttaatttcttttgttttcttatgtcatccagat 301
Query: 123 cctctacttaatttttgggttctgataatgcatccatcattctacttgtaaggcttccca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cctctacttaatttttgggttctgataatgcatccatcattctacttgtaaggcttccca 361
Query: 183 cagggctttctaattgagatattgtggattttttcagttctatctctatttcagtttatg 242
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagggctttctaattgagat----tggattttttcagttctatctctatttcagtttatg 417
Query: 243 ttctctgcaatgttttaatttctttatagaattaagtttttaatattgaattacattcct 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 ttctctgcaatgttttaatttctttatagaattaagtttttaatattgaattacgttcct 477
Query: 303 tttttcctttaattgtgtgtattttcttcaatgttacttatgcattaatc---------- 352
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttttttctttaattgtgtgtattttcttcaatgttacttatgcattaatcattgtattct 537
Query: 353 ---------------ttttttgtttataacttcttcaaatttcttgatttctttttgata 397
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 538 tgtagttcaatgattttttttgtttatatcttcttcaaatttcttgatttctttttgata 597
Query: 398 aaaattaatctaaatgattgtatgtctgttgtggtatctgccccacgaagattggacaag 457
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaaattaatcaaaatgattgtatgtctgttgtggtatctgccccacgaagattggacaag 657
Query: 458 tacaggtgagtggcctgaggtagctgattgacaaactgtttacttggaccagtgaaggtc 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tacaggtgagtggcctgaggtagctgattgacaaactgtttacttggaccagtgaaggtc 717
Query: 518 agagaaagatgtctcacatgggtctagtgataggccaggcaaaggtgattcaaaacccgc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agagaaagatgtctcacatgggtctagtgataggccaggcaaaggtgattcaaaacccgc 777
Query: 578 agccataattctggaactgggctaataactttccaaatgtcagtgggttagaataaagaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agccataattctggaactgggctaataactttccaaatgtcagtgggttagaataaagaa 837
Query: 638 caggacaga 646
|||||||||
Sbjct: 838 caggacaga 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_d02.g1 MSMg01no079_d02.g1 CHROMAT_FILE:
MSMg01no079_d02.g1 PHD_FILE: MSMg01no079_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:45 2005
(631 letters)
>mm_chr17_90146286_90147316
Length = 1031
Score = 727 bits (376), Expect = 0.0
Identities = 414/436 (94%), Gaps = 16/436 (3%)
Strand = Plus / Minus
Query: 210 actgcctagcttcttaacgaccattctgtgtatggctccttggtcccacactatcgtatc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 actgcctagcttcttaacgaccattctgtgtatggctccttggtcccacactatcgtatc 748
Query: 270 agtttgttaactcctttcatgccaattggaaggtaagaaa--------------gtgtgt 315
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 747 agtttgttaactcctttcatgccaattggaaggtaagaaagtctgtgtgtgtgtgtgtgt 688
Query: 316 gtgtatgtgtgtgtgtgtgtgtgtgtgttcatatgcatcatttattttctgtaaagtatt 375
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gtgtgtgtgtgtgtgtgtgtgtgtgtgttcatatgcatcatttattttctgtaaagtatt 628
Query: 376 ctgatgtgtgatagagatcatatacaatctgatgtttttactttgctgaaagatgtttgt 435
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgatgtgtaatagagatcacatacaatctgatgtttttactttgctgaaagatgtttgt 568
Query: 436 gtatagaatgtgtatgaaacaaatacaaattgccacatgtaaggggagggattgatacta 495
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 567 gcatagaatgtgtatgaaacaaat--taattgccacatgtaaggggagggattgatacta 510
Query: 496 aggtctagttccctaattggttcttgatttgtcagtaaagaaggctgggatccaattact 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggtctagttccctaattggttcttgatttgtcagtaaagaaggctgggatccaattact 450
Query: 556 aggtgggaggtataggtaggacttatgggtcacaggagaataaaatgatgcagggaaaga 615
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 449 aggtgggaggtataggtaggacttatgggtcacaggagaataaaatgatgtagggaaaga 390
Query: 616 gaagaaggtttttttt 631
||||||||||||||||
Sbjct: 389 gaagaaggtttttttt 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
