BAC Information

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BAC

Clone NameMSMg01-079E09
Chromosome17 (Build37)
Map Location 28,120,325 - 28,261,963
singlet/doubletdoublet
Overlap geneAnks1, Tcp11, 4930526A20Rik
Upstream geneBak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11
Downstream geneScube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079E09.T7 (MSMg01no079_e09.b1)MSMg01-079E09.TJ (MSMg01no079_e09.g1)
ACCAG300391AG300392
length710707
length of high quality
(start - end)		554 (42 - 595)472 (69 - 540)
definitionCHROMAT_FILE: MSMg01no079_e09.b1 PHD_FILE: MSMg01no079_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:51 2005CHROMAT_FILE: MSMg01no079_e09.g1 PHD_FILE: MSMg01no079_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,120,325 - 28,120,873)(28,261,492 - 28,261,963)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGATGTGCCGATGCACTGTGGCTGTAATGGTTTGCTTCATAGTCAACA
AGTATGGAGAGGATGGAGTTTTAACGAGAGTTAGCTGACTTCTTGGCCCT
GGTCGCCATGCATAAGTTGAGGTAGAAAACTCAGAGACTCCTCGTAACCA
TCTTTGGGTTGCACTCTCCAGAAAGCTCCCACCAGCTCAGTTGACAGAGC
TGGTTTTGTCTCAAGGACGTGAGGTGACAGCCCTGAGTTTGCACAGGGGC
CTTGGGCCCTTGCTTGGCAGAGGATGGGCATGACCACTGGGCACGGACAG
CCCAACGAATTTGCTTTCCATGCAGAGTTTGCCCTTCCTCCAGACCTCCA
GGTTCCTTCTCTGGGCCTGCGGAGGCCACGAAAGGCTGAGTCTTGTGGCT
GTTCTGGCTGACTGTGCTGGCACTCTGGTTCTTCCATCTGGATCCTTTTT
ATTGTGTGCGTTTATCTCTGCGTGTGTCCCCACTGCAACTTCTTCTGCTC
TTGTTTGGGTTTTAAACATTTCTTCGCTGTCGCTGGCTGCTTGGAGCCTT
GGTCTCAGTAGCTCTGGATCTTCCTCGCCCATTTTCATGTAGCTGGGGAA
TCAACTAAATGAAAACAACAAAATGAGCCTAAAGCAGATGGGATTGATGC
ACATGTGGGC

AAAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAGGGTTGAACCCCGGTGAGCAGGCTGCACC
CCAAGCTGCTTAGCTTGCCCACATCGATCCCCCCAGTCCATTGGGGTTAA
CTAATTAACTGTCACACTCAGCCATCCCTTTTAACTCAGTGACTGATCTT
GCCTCCCAGCAAACCTAGCCCCACTCCTGTTCTGTGCATAGAGTTTCCCG
GGTCAAGCATGTCCACCTACTTGCACTTTTCTATCTGCTGTCTTTGTAAG
AGAGTTGTTACCGCTGAGCCCATGCAGCCTGCACAGCCCAAGGCATTCAC
TATATGGTGCTTGATTGACAGAAAAATGTGTTCTCGTGGGTAGCCAGTGC
TTTCAATGGCTGAGCCATCTCTCCAGGCCCAGAGACACTTTCATCCTCTG
GTCATTCCTCAGGAGCCTCAACAGGAAAGTACCTGTCACCCATTACGTGA
TGGCTGAAAAATCAACGGTAAAGAATTGCCTGTTTGAGAAACCGCAGGAA
TGTTCTCTTGCCTCAAGAAAGCTCTCTGCTGCTGTGCCTGTGGCTCCCGT
GTTAAAGTTTGTCTAGCATGCTGGGATCTATCCCTGTGTGCTGTAAAAGC
GAGCGGGGTTGGACATGCCGTAAGGTGAAAAAGCAAAAATTCAAGGCCTC
CTCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_e09.b1 MSMg01no079_e09.b1 CHROMAT_FILE:
MSMg01no079_e09.b1 PHD_FILE: MSMg01no079_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:51 2005
         (554 letters)



>mm_chr17_28120121_28121074
          Length = 954

 Score = 1031 bits (533), Expect = 0.0
 Identities = 545/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggatgtgccgatgcactgtggctgtaatggtttgcttcatagtcaacaagtat 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggatgtggggatgcactgtggctgtaatggtttgcttcatagtcaacaagtat 264

                                                                       
Query: 65  ggagaggatggagttttaacgagagttagctgacttcttggccctggtcgccatgcataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagaggatggagttttaacgagagttagctgacttcttggccctggtcgccatgcataa 324

                                                                       
Query: 125 gttgaggtagaaaactcagagactcctcgtaaccatctttgggttgcactctccagaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgaggtagaaaactcagagactcctcgtaaccatctttgggttgcactctccagaaag 384

                                                                       
Query: 185 ctcccaccagctcagttgacagagctggttttgtctcaaggacgtgaggtgacagccctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcccaccagctcagttgacagagctggttttgtctcaaggacgtgaggtgacagccctg 444

                                                                       
Query: 245 agtttgcacaggggccttgggcccttgcttggcagaggatgggcatgaccactgggcacg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtttgcacaggggccttgggcccttgcttggcagaggatgggcatgaccactgggcacg 504

                                                                       
Query: 305 gacagcccaacgaatttgctttccatgcagagtttgcccttcctccagacctccaggttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacagcccaacgaatttgctttccatgcagagtttgcccttcctccagacctccaggttc 564

                                                                       
Query: 365 cttctctgggcctgcggaggccacgaaaggctgagtcttgtggctgttctggctgactgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttctctgggcctgcggaggccacgaaaggctgagtcttgtggctgttctggctgactgt 624

                                                                       
Query: 425 gctggcactctggttcttccatctggatcctttttattgtgtgcgtttatctctgcgtgt 484
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 625 gctggcactctggttcttccatccggatcctgtttattgtgtgcgtttatctctgcgtgt 684

                                                                       
Query: 485 gtccccactgcaacttcttctgctcttgtttgggttttaaacatttcttcgctgtcgctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtccccactgcaacttcttctgctcttgtttgggttttaaacatttcttcgctgtcgctg 744

                    
Query: 545 gctgcttgg 553
           |||||||||
Sbjct: 745 gctgcttgg 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_e09.g1 MSMg01no079_e09.g1 CHROMAT_FILE:
MSMg01no079_e09.g1 PHD_FILE: MSMg01no079_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:51 2005
         (472 letters)



>mm_chr17_28261445_28262316
          Length = 872

 Score =  859 bits (444), Expect = 0.0
 Identities = 465/472 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagggttgaaccccggtgagcaggctgcaccccaagctgcttagcttgcccacatcgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caagggttgaaccccggtgagcaggctgcaccccaagctgcttagcttgcccacatcgat 460

                                                                       
Query: 61  ccccccagtccattggggttaactaattaactgtcacactcagccatcccttttaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ccccccagtccattggggttaactaattaactgtcacactcagccatcccttttaactca 400

                                                                       
Query: 121 gtgactgatcttgcctcccagcaaacctagccccactcctgttctgtgcatagagtttcc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtgactgatcttgccttccagcaaacctagccccactcctgttctgtgcatagagtttcc 340

                                                                       
Query: 181 cgggtcaagcatgtccacctacttgcacttttctatctgctgtctttgtaagagagttgt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 339 cgggtcaagcatgtccacctacttgcacttttctatctgctgtcttagtaagagagttgt 280

                                                                       
Query: 241 taccgctgagcccatgcagcctgcacagcccaaggcattcactatatggtgcttgattga 300
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 279 taccgctgagcccatgcagcctgcacagcccaaggcgttcactacatggtgcttgattga 220

                                                                       
Query: 301 cagaaaaatgtgttctcgtgggtagccagtgctttcaatggctgagccatctctccaggc 360
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 219 cagaaaaatgtgtcctcgtgggtagccagtgctctcaatggctgagccatctctccaggc 160

                                                                       
Query: 361 ccagagacactttcatcctctggtcattcctcaggagcctcaacaggaaagtacctgtca 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 159 ccagagacactttcatcctctggtcattcctcgggagcctcaacaggaaagtacctgtca 100

                                                               
Query: 421 cccattacgtgatggctgaaaaatcaacggtaaagaattgcctgtttgagaa 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  cccattacgtgatggctgaaaaatcaacggtaaagaattgcctgtttgagaa 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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