BAC Information

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BAC

Clone NameMSMg01-079M01
Chromosome17 (Build37)
Map Location 72,062,713 - 72,063,312
singlet/doubletsinglet
Overlap gene4632412N22Rik
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43
Downstream geneBC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079M01.T7 (MSMg01no079_m01.b1)MSMg01-079M01.TJ (MSMg01no079_m01.g1)
ACCAG300758AG300759
length709704
length of high quality
(start - end)
604 (43 - 646)113 (270 - 382)
definitionCHROMAT_FILE: MSMg01no079_m01.b1 PHD_FILE: MSMg01no079_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:28 2005CHROMAT_FILE: MSMg01no079_m01.g1 PHD_FILE: MSMg01no079_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACGGGCAACTTGTTTCCAGACTCTTCACTTTCCTATTAATCATCTTCC
CTAACTATGTGATATTCTCCATATGTATCTTGTTTTCAAGATTTTCTAAA
ATGTATGTGTATGCATGTTTGTCTAGGTATATGTGTGGTGTGCGGGTACT
GCAGAGTCCAATACACAATGTCAGAACTCCTGGAGTTGTGGATGATCGTA
CGCTGTACGCTGTAGGTACAAGGAGTGGAATTTGGGTTCCCTGGAAGACT
TCTTGGATGTACCCAACCACAACCTACCTCAAAGCATAAACAAGACACTA
GTAGCAGCTTTGGCCATAAACATAAGAGCAGCCATATGTCTCCTCACTGG
GAAAGTGCTCTTAACCACTAAGCCATCTCTCCAGCCCCCGTAAGTATCTC
CTTAATAAATATCCATTATAGCTATTACCCAATATATCCAATATCCATAT
AGCTCTATATCCAATTAAAAGAATATTTAATATTCTGTTGCACAGCTATC
AAAAGTGTTCTTTTCCCCCCCCTAGTTTGGGACAGAAGTCTGTGGGAAGG
TATAGGACAAAGCAGTCAACTCTACCTGCTAATAGTGCTGGCTGGGTACA
AGAATCAAGAAGAGCGCGGGTCTGGGAACTCACACATACACCAGGACTGG
AGAGAAAGG
GAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACTGAGGAATACTGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCACATCCTTAATCATCACGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCACATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGCATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGT
CGGTTCCTAAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATTTTCATAGCAGCTTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAATTGTGGTACAT
CTACACCATGCAGTACTACTCAGCTATTACAGATTCTATTTCATAAAAAG
CTATTTATGAAATCCCTAGCCCAATGGAGGGACCTGCAGGACATCCTCCC
GTGCGAGGTTACCCATCCCCAACGAACTCACCCATAAGGACTCCCTGAAA
AGCGGGAATTATCCCCTACCCCAGGACACCCCATATATAAAATTCATTTT
CCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_m01.b1 MSMg01no079_m01.b1 CHROMAT_FILE:
MSMg01no079_m01.b1 PHD_FILE: MSMg01no079_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:28 2005
         (604 letters)



>mm_chr17_72062501_72063504
          Length = 1004

 Score = 1089 bits (563), Expect = 0.0
 Identities = 591/603 (98%), Gaps = 6/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacgggcaacttgtttccagactcttcactttcctattaatcatcttccctaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcacgggcaacttgtttccagactcttcactttcctattaatcatcttccctaact 753

                                                                       
Query: 65  atgtgatattctccatatgtatcttgttttcaagattttctaaaatgtatgtgtatgcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atgtgatattctccatatgtatcttgttttcaagattttctaaaatgtatgtgtatgcat 693

                                                                       
Query: 125 gtttgtctaggtatatgtgtggtgtgcgggtactgcagagtccaatacacaatgtcagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gtttgtctaggtatatgtgtggtgtgcgggtactgcagagtccaatacacaatgtcagaa 633

                                                                       
Query: 185 ctcctggagttgtggatgatcgtacgctgtacgctgtaggtacaaggagtggaatttggg 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 632 ctcctggagttgtggatgatcgtacgctgtacactgtaggtacaaggagtggaatttggg 573

                                                                       
Query: 245 ttccctggaagacttcttggatgtacccaaccacaacctacctcaaagcataaacaagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttccctggaagacttcttggatgtacccaaccacaacctacctcaaagcataaacaagac 513

                                                                       
Query: 305 actagtagcagctttggccataaacataagagcagccatatgtctcctcactgggaaagt 364
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 512 actagtagcagctttggccataaacataagaacagtcatatgtctcctcactgggaaagt 453

                                                                       
Query: 365 gctcttaaccactaagccatctctccagcccccgtaagtatctccttaataaatatccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gctcttaaccactaagccatctctccagcccccgtaagtatctccttaataaatatccat 393

                                                                       
Query: 425 tatagctattacccaatatatccaatatccatatagctctatatccaattaaaagaatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tatagctattacccaatatatccaatatccatatagctctatatccaattaaaagaatat 333

                                                                       
Query: 485 ttaatattctgttgcacagctatcaaaagtgttc---ttttcccccccctagtttgggac 541
           ||||||||||||||||||||||||||||||||||   ||||   ||||||||||||||||
Sbjct: 332 ttaatattctgttgcacagctatcaaaagtgttcccttttt---ccccctagtttgggac 276

                                                                       
Query: 542 agaagtctgtgggaaggtataggacaaagcagtcaactctacctgctaatagtgctggct 601
           |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 275 agaagtctgcaggaaggtataggagaaagcagtcaactctacctgctaatagtgctggct 216

              
Query: 602 ggg 604
           |||
Sbjct: 215 ggg 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)