BAC Information

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BAC

Clone NameMSMg01-079M07
Chromosome17 (Build37)
Map Location 32,404,917 - 32,405,446
singlet/doubletsinglet
Overlap geneBrd4
Upstream geneTsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, LOC100043434
Downstream geneLOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079M07.T7 (MSMg01no079_m07.b1)MSMg01-079M07.TJ (MSMg01no079_m07.g1)
ACCAG300770AG300771
length695692
length of high quality
(start - end)
622 (46 - 667)530 (73 - 602)
definitionCHROMAT_FILE: MSMg01no079_m07.b1 PHD_FILE: MSMg01no079_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:29 2005CHROMAT_FILE: MSMg01no079_m07.g1 PHD_FILE: MSMg01no079_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCTTGACCATGACGTTAATAGCTGTGATGTTAATAGCTGTGACG
TTAATAGCTGACCAATAAGTTCAAAATGTACTGCTGCTTTGCTGATAACC
CACCATAAGGGCAGGCAGAGTGAGTCACTAGGCCAAAGGTAGTCACCCAG
TGCAAACCAACCAATGCCTGAAAGGGTTACTTGCTACACCAATGAGAATA
AGCCAGCTAGTCCTGTTGCCTAAATCTGCCCCTTACAAGGTATAAAAAGT
GTGTTCTTTTTTAACTCAGAGTCTCTCCTCTTGTCTGCGTGCTGAGGAGG
GTCCCCAACATGTTGGATCAATTAAAAAAAAACAAAAAACTAAAAACAAA
AAAACCTCTTGCAGTTTGCAACGATGGCGATCTCTGTGGTCTTTGTGAGT
GAGGGTCTTTTGGCAGACTCCAACAGCACAAGTCCCTCTTGAGAGCAGGG
ACCACATGTAGGGGTTCAGGACATCTAATAGGCTGTCCTGCCTAACAGGA
GGGGAGGTCAGAGGCCCAGGCCACCTTTTCCTCTTCTCTCCTTCCTCTCT
TTGGTCCTTTATGTTTTCTCTCATCTCCTTCCTCTTCCCTCTTCTCTTTT
TCTCTTTTTTTTTTTTTTTGAACAGGTCTCACCCTGTAAGACAAC
CATTGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTCAGTGCTGTTGTCAACTGCTTTGAC
AGGCTTTAGGAAAAGTGGCCTCACTTTATAGTCTTATGACCATTTTCTTG
TGGACATGGCCCTGAAGGCAGGAGAGGCATACTGCTAATGCAAGGGGAAA
TCTAAGCTAGACCTGGTATCATTCAATATTGTTCTCAGAAGTTAGTAAGA
GGTGCCGAGGTTCTGGGGAGAGAGAAGAGAACGCCAGATAATAATAATAT
TAAGTAAGCATGGGTGCATCCTTTCTCTTCCTCTAAAGTTAGAAATGAGA
ACCTAGCTTGAGAAAGCCAGACTCAAAGTGGGTTGAGAACACTGGTGGTA
GATTCAGCTTCGCTGGGAGGGCTTCTCTTGCCTTTACCCCATCTATTCAT
CCTGTTATCATACAAGTTATTTAGTACTTAGAGTATTCTCACCCTGAACC
CCATTTTGTGAGTGGAGCTTTGAGCAAGACTGCCCATTTTGGCACCTTGT
TTTGTATATGGAGAGAATGTGAACAATGGAGAGAAACTGAACTATGCTAC
TAGATATACTGTTAGAAGTTCTCCTTGGAGTCAATGGGAGTCAAGATGAG
GAGAAAGAGTTACCTGATGGTTCAGGATGGCTCCCAAGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_m07.g1 MSMg01no079_m07.g1 CHROMAT_FILE:
MSMg01no079_m07.g1 PHD_FILE: MSMg01no079_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:29 2005
         (530 letters)



>mm_chr17_32404717_32405646
          Length = 930

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcagtgctgttgtcaactgctttgacaggctttaggaaaagtggcctcactttatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agtcagtgctgttgtcaactgctttgacaggctttaggaaaagtggcctcactttatagt 671

                                                                       
Query: 61  cttatgaccattttcttgtggacatggccctgaaggcaggagaggcatactgctaatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cttatgaccattttcttgtggacatggccctgaaggcaggagaggcatactgctaatgca 611

                                                                       
Query: 121 aggggaaatctaagctagacctggtatcattcaatattgttctcagaagttagtaagagg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 610 aggggaaatctaagctagacctggtatcactcaatattgttctcagaagttagtaagagg 551

                                                                       
Query: 181 tgccgaggttctggggagagagaagagaacgccagataataataatattaagtaagcatg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 550 tgccgaggttctggggagagagaagagaaggccagataataataatattaagtaagcatg 491

                                                                       
Query: 241 ggtgcatcctttctcttcctctaaagttagaaatgagaacctagcttgagaaagccagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggtgcatcctttctcttcctctaaagttagaaatgagaacctagcttgagaaagccagac 431

                                                                       
Query: 301 tcaaagtgggttgagaacactggtggtagattcagcttcgctgggagggcttctcttgcc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 430 tcaaagtgggttgagaacactggtggtagattcagcttcgttgggagggcttctcttgcc 371

                                                                       
Query: 361 tttaccccatctattcatcctgttatcatacaagttatttagtacttagagtattctcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttaccccatctattcatcctgttatcatacaagttatttagtacttagagtattctcac 311

                                                                       
Query: 421 cctgaaccccattttgtgagtggagctttgagcaagactgcccattttggcaccttgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cctgaaccccattttgtgagtggagctttgagcaagactgcccattttggcaccttgttt 251

                                                             
Query: 481 tgtatatggagagaatgtgaacaatggagagaaactgaactatgctacta 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgtatatggagagaatgtgaacaatggagagaaactgaactatgctacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)