Query= MSMg01no079_p02.b1 MSMg01no079_p02.b1 CHROMAT_FILE:
MSMg01no079_p02.b1 PHD_FILE: MSMg01no079_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:42 2005
(659 letters)
>mm_chr17_42716921_42717979
Length = 1059
Score = 1266 bits (655), Expect = 0.0
Identities = 655/655 (100%)
Strand = Plus / Minus
Query: 5 gaattctcttgatcctgctgtctgttcctttccctgtgccaggtggcaatgctgatttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattctcttgatcctgctgtctgttcctttccctgtgccaggtggcaatgctgatttgt 800
Query: 65 gctggtttcctgattgcctggattccttatgcggtcgtctctgtgtggtcagcttttgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gctggtttcctgattgcctggattccttatgcggtcgtctctgtgtggtcagcttttgga 740
Query: 125 aggccagactccatccccatacagctctccgtggtgcccacactccttgcaaaatcagca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aggccagactccatccccatacagctctccgtggtgcccacactccttgcaaaatcagca 680
Query: 185 gcgatgtacaatccaatcatctaccaggtcattgattacagatttgcctgttgccaggct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcgatgtacaatccaatcatctaccaggtcattgattacagatttgcctgttgccaggct 620
Query: 245 ggtggtttgagaggaacgaagaagaaatctttggaagactttaggtaaaattctgaagct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtggtttgagaggaacgaagaagaaatctttggaagactttaggtaaaattctgaagct 560
Query: 305 agaacgtaattatgtttctttgtcttaaaatgctgtggtgatttaagtaaacacttggct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agaacgtaattatgtttctttgtcttaaaatgctgtggtgatttaagtaaacacttggct 500
Query: 365 tagaactaaattcctaagtagctgggttaggaggtttctgttttacattcataaaaatac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tagaactaaattcctaagtagctgggttaggaggtttctgttttacattcataaaaatac 440
Query: 425 cggaagccaagtcatcagatatgtatgggttggatgatggccagatattgagaacagcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cggaagccaagtcatcagatatgtatgggttggatgatggccagatattgagaacagcat 380
Query: 485 tctggttttgatcctagagcagccaggatgccattttgtgcatatttactggttgtggac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctggttttgatcctagagcagccaggatgccattttgtgcatatttactggttgtggac 320
Query: 545 ttccttcttggatattaaatccatatcagtccaagaatgctgttctatgtggcactgatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttccttcttggatattaaatccatatcagtccaagaatgctgttctatgtggcactgatt 260
Query: 605 caacaataaattcatgtgaaggaattatttgccactgttgtttgggtcatcagaa 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caacaataaattcatgtgaaggaattatttgccactgttgtttgggtcatcagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_p02.g1 MSMg01no079_p02.g1 CHROMAT_FILE:
MSMg01no079_p02.g1 PHD_FILE: MSMg01no079_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:42 2005
(603 letters)
>mm_chr17_42543018_42544021
Length = 1004
Score = 1065 bits (551), Expect = 0.0
Identities = 590/603 (97%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 2 cttagtgtggctgtgtgtatggaagtagaaccatcttataggaacatggtcaggctctca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cttagtgtggctgtgtgtatggaagtagaaccatcttataggaacatggtcaggctctca 261
Query: 62 gggaccacttccctgaagaaaactcactctcttccgcagcagccatcagttaccaagagc 121
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 262 gggaccacttccctgaagaaaactgactctcttccgcaacagccatcagttaccaagagc 321
Query: 122 ttctcagttacacttggggttttatgaacctctgtttcatacatgctaagattttggctg 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 ttctcagttacacttggggttttatgaacctctgtttcatatatgctaagattttggctg 381
Query: 182 acttgacgttctacaggttttctgcacactgtcccagccagttcatgtgtgtaattggct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acttgacgttctacaggttttctgcacactgtcccagccagttcatgtgtgtaattggct 441
Query: 242 tgtcatctccagcaaattctctttacacaactgttatctttggcttttactaacctcatt 301
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 442 tgtcatctccagcaaattctctttacacaactgttacctttggcttttattaacctcatt 501
Query: 302 ttggactaagaactatagagatggttagaagagaatcttaaaagtgttccttacctagag 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 502 ttggactaagaattatagagatggttagaagagaatcttaaaagtgttccttatctagag 561
Query: 362 ttataaaag-tgaaggtctctttgacgagatgagccaattctctttattttaaaccattg 420
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 562 ttataaaaggtgaagctctctttgatgagatgagccaattctctttattttaaaccattg 621
Query: 421 aatgcacaatatcttgaatggttgctaataactttaaatataatagctttcttgtaacaa 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 622 aatgcacaatatcttgaatggttgctaataactttaaatattatagctttcttgtaacaa 681
Query: 481 tgtgctaagtataaaatatatcaaattttgggtgggttttggctaatgcttttatatcta 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 682 tgtgctaagtataaaatatatcaaattttggatgggttttggctaatgcttttatatcta 741
Query: 541 tcagccaactttcctccttgccaataatttttggtgagcaaataacaatcaacattaata 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcagccaacttccctccttgccaataatttttggtgagcaaataacaatcaacattaata 801
Query: 601 ttg 603
|||
Sbjct: 802 ttg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
