Query= MSMg01no080_c08.b1 MSMg01no080_c08.b1 CHROMAT_FILE:
MSMg01no080_c08.b1 PHD_FILE: MSMg01no080_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:57 2005
(272 letters)
>mm_chr17_60139847_60140519
Length = 673
Score = 482 bits (249), Expect = e-140
Identities = 264/269 (98%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 5 gaattcattaaggtc-gattaatcaccctgtttccatttgtaatttatatggcataccgt 63
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 205 gaattcattaaggtaagattaatcaccctgtttccatttgtaatttatatggtataccat 264
Query: 64 tagctatacaccttctccgaactctttttacaaaaactctattctctatgggagaatggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagctatacaccttctccgaactctttttacaaaaactctattctctatgggagaatggc 324
Query: 124 atttcatatcaccccaggatatatcttactgttacattagcttactatgataacatgcta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttcatatcaccccaggatatatcttactgttacattagcttactatgataacatgcta 384
Query: 184 gctacacatgaataaacgatttacgtaattcctgcagctaacattctttaaacttgaata 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 gctacacatgaataaacgatttacgtaattcctgcagttaacattctttaaacttgaata 444
Query: 244 gaaagcaatactcagcatataaatgagaa 272
|||||||||||||||||||||||||||||
Sbjct: 445 gaaagcaatactcagcatataaatgagaa 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space: 174632
Effective search space used: 174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no080_c08.g1 MSMg01no080_c08.g1 CHROMAT_FILE:
MSMg01no080_c08.g1 PHD_FILE: MSMg01no080_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:57 2005
(477 letters)
>mm_chr17_60286968_60287843
Length = 876
Score = 837 bits (433), Expect = 0.0
Identities = 466/477 (97%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 1 attcacaagatcaaaaactctaagacctcaacaacctgaaaacatgcttacactcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 attcacaagatcaaaaactctaagacctcaacaacctgaaaacatgcttacactcaaata 617
Query: 61 caaagcatgtggatttgccatcactcttctcctggttatttgtttttttctttcaatacc 120
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 616 caaagcatgtggatttgccatcactcttctcctggttattt-attttatctttcaatacc 558
Query: 121 agtatgtatcttctgcatgacttatgatatagacacttcagatatacaaggatataaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 557 agtatgtatcttctgcatgacttatgatatagacacttcagatatacaaggatatgaatg 498
Query: 181 aacaaaatatttaaaattgtacttagataattcatttttcttaggcaaagaagcattatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aacaaaatatttaaaattgtacttagataattcatttttcttaggcaaagaagcattatg 438
Query: 241 ttatccagattaagcttaacggggttgtataaaaccagtaccaaagacacaaagaaaatc 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 437 ttatccagattaagcttaacggggttttataaaaccagtaccaaagacacaaaggaaatc 378
Query: 301 taagaggtacaatataaaataagtttatgtttcagataaaccacaaagcacaattctatt 360
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 377 caagaggtacaatataaaataagtttgtgtttcagataaaccagaaagcacaattctatt 318
Query: 361 attctactgttctgccaccttatttataattattgtacatataattatatgcacatgtgt 420
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 317 attctactgttctgccaccttatttataattattgtacctataattatatgtacatgtgt 258
Query: 421 ttgtttctagtatctccttgtatgtggacatatattctcacaggcacagagactaga 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgtttctagtatctccttgtatgtggacatatattctcacaggcacagagactaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
