Query= MSMg01no080_g16.b1 MSMg01no080_g16.b1 CHROMAT_FILE:
MSMg01no080_g16.b1 PHD_FILE: MSMg01no080_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:19 2005
(371 letters)
>mm_chr17_18735484_18736254
Length = 771
Score = 665 bits (344), Expect = 0.0
Identities = 362/368 (98%), Gaps = 1/368 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcaaatgacctgatgcaccagataggtaaatactacataatatatgtgtaatc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 376 ggaattctcaaatgagttgatgcaccagataggtaaatactacataatatatgtataatc 317
Query: 64 aactaaatttaaatgcatatggcagtagtcatgaaacttacatacagttgaacatgtcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aactaaatttaaatgcatatggcagtagtcatgaaacttacatacagttgaacatgtcac 257
Query: 124 aaattttgttaaactatgaatatgggctctagttggattgcgctggttgacacatattat 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agattttgttaaactatgaatatgggctctagttggattgcgctggttgacacatattat 197
Query: 184 attttgaataataaaatatttttccgaatgaaacttcacactgagttagtagatgacata 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 196 attttgaataataaaatatttttccgaatgaaacttcacactgagttagtaggtgacata 137
Query: 244 taatgtcaagaactagaatgccataaaaatataatatattttcatttaatttaagacagg 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 136 taatgtcaagaactagaatgccataaaaatataa-atattttcatttaatttaagacagg 78
Query: 304 tggtagattcaatataaataaataaattcaaacaaaacattatatatatattcaataaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tggtagattcaatataaataaataaattcaaacaaaacattatatatatattcaataaga 18
Query: 364 gatttaca 371
||||||||
Sbjct: 17 gatttaca 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_g16.g1 MSMg01no080_g16.g1 CHROMAT_FILE:
MSMg01no080_g16.g1 PHD_FILE: MSMg01no080_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:19 2005
(446 letters)
>mm_chr17_18609256_18610101
Length = 846
Score = 845 bits (437), Expect = 0.0
Identities = 445/449 (99%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 1 tctgtgcaaggatattaaattgaagcaaggtattggtgaccttggggcaagatcccaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgcaaggatattaaattgaagcaaggtattggtgaccttggggcaagatcccaccc 260
Query: 61 aggtaaattttggaacaggaaacgtaggacaacctcttatttctaggagactgaggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaaattttggaacaggaaacgtaggacaacctcttatttctaggagactgaggaaaa 320
Query: 121 cagatgtaagttcaaagtaattctgggacagagaaagtttcaggtccaggcatagggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatgtaagttcaaagtaattctgggacagagaaagtttcaggtccaggcatagggtaa 380
Query: 181 cacaccttcaatcccagcacttagaaaacaggcctgaagcatgttgacgtcagaggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaccttcaatcccagcacttagaaaacaggcctgaagcatgttgacgtcagaggttta 440
Query: 241 ttctttaaagttttgtgtagactaatgttcacctttggctttaactcatttctaatgtag 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttaaagttttgtgtagactattgttcacctttggctttaactcatttctaatgtag 500
Query: 301 tttaattttatttgtttctgaaaaactttgtagataggcaatttttatactaataacact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaattttatttgtttctgaaaaactttgtagataggcaatttttatactaataacact 560
Query: 361 gtttatttgtgagtcaatatattataaaatggtgtgcttatattttgtaaaagaagaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttatttgtgagtcaatatattataaaatggtgtgcttatattttgtaaaagaagaaga 620
Query: 421 aggaggaggaggaggaggag---gagaag 446
|||||||||||||||||||| ||||||
Sbjct: 621 aggaggaggaggaggaggagaaggagaag 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
